Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| trna (5-methylaminomethyl-2-thiouridylate)-methyltransferase | SAMN05421847_1576 | Not Available | Positive | 1645899 - 1647086 | 44631.3 |
| hypothetical protein | SAMN05421847_1577 | Not Available | Positive | 1647214 - 1647837 | 23785.3 |
| hypothetical protein | SAMN05421847_1578 | Not Available | Positive | 1647913 - 1649937 | 79206.0 |
| outer membrane protein | SAMN05421847_1580 | Not Available | Positive | 1650309 - 1651658 | 49729.5 |
| sprt-like family protein | SAMN05421847_1581 | Not Available | Positive | 1651659 - 1652252 | 23385.6 |
| mannose-1-phosphate guanylyltransferase (gdp) | SAMN05421847_1582 | Not Available | Positive | 1652252 - 1653334 | 41394.8 |
| magnesium chelatase family protein | SAMN05421847_1583 | Not Available | Positive | 1653802 - 1655334 | 56613.4 |
| alkylated dna repair dioxygenase alkb | SAMN05421847_1585 | Not Available | Positive | 1655464 - 1656072 | 23749.2 |
| peptide-methionine (r)-s-oxide reductase | SAMN05421847_1586 | Not Available | Positive | 1656220 - 1656756 | 19939.8 |
| phosphatidylserine decarboxylase | SAMN05421847_1587 | Not Available | Negative | 1656841 - 1657491 | 24501.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
