Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| uncharacterized conserved protein, duf885 familyt | SAMN05421847_1554 | Not Available | Positive | 1624987 - 1626783 | 68637.5 |
| uroporphyrinogen-iii synthase | SAMN05421847_1555 | Not Available | Positive | 1626809 - 1627495 | 25981.6 |
| uroporphyrinogen decarboxylase | SAMN05421847_1556 | Not Available | Positive | 1627502 - 1628527 | 38481.6 |
| protein of unknown function | SAMN05421847_1557 | Not Available | Positive | 1628546 - 1629286 | 28483.7 |
| cysteine desulfurase /l-selenocysteine selenide-lyase (l-alanine-forming) | SAMN05421847_1558 | Not Available | Negative | 1629283 - 1630509 | 45484.2 |
| hypothetical protein | SAMN05421847_1559 | Not Available | Negative | 1630554 - 1631348 | 30489.7 |
| glycyl-trna synthetase | SAMN05421847_1560 | Not Available | Negative | 1631826 - 1633367 | 59313.4 |
| dihydrofolate synthase / folylpolyglutamate synthase | SAMN05421847_1562 | Not Available | Positive | 1633846 - 1635087 | 47019.6 |
| Trna-val | Not Available | Not Available | Positive | 1635131 - 1635208 | Not Available |
| hypothetical protein | SAMN05421847_1564 | Not Available | Negative | 1635317 - 1635712 | 15353.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
