Chryseobacterium humi strain DSM 21580

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Halpernia

Description

Chryseobacterium humi strain DSM 21580 is a Gram-negative, non-motile bacterium characterized by its rod shape. This strain is aerobic, requiring oxygen for growth, and thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The genetic makeup of this strain is indicated by the presence of a single replicon, and its genomic data can be accessed under the accession number FNUS00000000.1. The traits of Chryseobacterium humi suggest a role in various ecological niches, particularly in environments where aerobic conditions prevail. Its mesophilic nature indicates adaptability to moderate temperature ranges, which are common in many terrestrial ecosystems. As a member of the Chryseobacterium genus, this strain may contribute to the decomposition of organic matter, playing a potential role in nutrient cycling within its habitat. Understanding the ecological role of such bacteria is crucial, as they can influence soil health and the overall functioning of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusHalpernia
SpeciesHalpernia humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium humi strain DSM 21580 genome assembly, contig:

Gene Summary

Adenine Count

1047777 bp

Thymine Count

1041008 bp

Guanine Count

517458 bp

Cytosine Count

514943 bp

Genome Length

3121186 bp

Protein-coding Genes

2872 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
small subunit ribosomal protein s20SAMN05421847_1523Not AvailablePositive1587432 - 15876869692.96
Trna-gluNot AvailableNot AvailablePositive1587700 - 1587771Not Available
arsenate reductaseSAMN05421847_1525Not AvailablePositive1588069 - 158870124090.9
arsenite transporter, acr3 familySAMN05421847_1526Not AvailablePositive1588704 - 158974438316.6
3-dehydroquinate dehydrataseSAMN05421847_1527Not AvailablePositive1589909 - 159032215719.9
protein of unknown functionSAMN05421847_1528Not AvailableNegative1590399 - 159142738582.0
phosphoenolpyruvate carboxykinase (atp)SAMN05421847_1529Not AvailableNegative1591648 - 159325259417.4
mevalonate kinaseSAMN05421847_1530Not AvailableNegative1593715 - 159464435481.5
[acyl-carrier-protein] s-malonyltransferaseSAMN05421847_1531Not AvailableNegative1594786 - 159566130688.1
abc-type branched-chain amino acid transport system, substrate-binding proteinSAMN05421847_1532Not AvailableNegative1595690 - 159761271074.9

Displaying genes 1471 – 1480 of 2910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.