Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| small subunit ribosomal protein s20 | SAMN05421847_1523 | Not Available | Positive | 1587432 - 1587686 | 9692.96 |
| Trna-glu | Not Available | Not Available | Positive | 1587700 - 1587771 | Not Available |
| arsenate reductase | SAMN05421847_1525 | Not Available | Positive | 1588069 - 1588701 | 24090.9 |
| arsenite transporter, acr3 family | SAMN05421847_1526 | Not Available | Positive | 1588704 - 1589744 | 38316.6 |
| 3-dehydroquinate dehydratase | SAMN05421847_1527 | Not Available | Positive | 1589909 - 1590322 | 15719.9 |
| protein of unknown function | SAMN05421847_1528 | Not Available | Negative | 1590399 - 1591427 | 38582.0 |
| phosphoenolpyruvate carboxykinase (atp) | SAMN05421847_1529 | Not Available | Negative | 1591648 - 1593252 | 59417.4 |
| mevalonate kinase | SAMN05421847_1530 | Not Available | Negative | 1593715 - 1594644 | 35481.5 |
| [acyl-carrier-protein] s-malonyltransferase | SAMN05421847_1531 | Not Available | Negative | 1594786 - 1595661 | 30688.1 |
| abc-type branched-chain amino acid transport system, substrate-binding protein | SAMN05421847_1532 | Not Available | Negative | 1595690 - 1597612 | 71074.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
