Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421847_1513 | Not Available | Negative | 1577271 - 1577780 | 19153.3 |
| protein of unknown function | SAMN05421847_1514 | Not Available | Negative | 1577785 - 1579071 | 46233.8 |
| hypothetical protein | SAMN05421847_1515 | Not Available | Negative | 1579099 - 1579803 | 26920.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421847_1516 | Not Available | Negative | 1579781 - 1580287 | 20201.5 |
| do/deqq family serine protease | SAMN05421847_1517 | Not Available | Positive | 1580528 - 1582066 | 54659.4 |
| hypothetical protein | SAMN05421847_1518 | Not Available | Negative | 1582343 - 1582795 | 16883.4 |
| 2-iminobutanoate/2-iminopropanoate deaminase | SAMN05421847_1519 | Not Available | Negative | 1582796 - 1583179 | 13894.8 |
| lps assembly outer membrane protein lptd (organic solvent tolerance protein osta) | SAMN05421847_1520 | Not Available | Negative | 1583265 - 1585880 | 98621.4 |
| n-acetylmuramoyl-l-alanine amidase | SAMN05421847_1521 | Not Available | Positive | 1585908 - 1587197 | 48296.4 |
| Trna-glu | Not Available | Not Available | Positive | 1587257 - 1587331 | Not Available |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
