Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cytochrome bd-i ubiquinol oxidase subunit 1 apoprotein | SAMN05421847_1493 | Not Available | Negative | 1549449 - 1550795 | 50107.6 |
| allosteric nadp-dependent malic enzyme | SAMN05421847_1494 | Not Available | Negative | 1551488 - 1553779 | 85010.1 |
| badf-type atpase | SAMN05421847_1495 | Not Available | Negative | 1553928 - 1554794 | 32498.2 |
| hypothetical protein | SAMN05421847_1496 | Not Available | Negative | 1554852 - 1555115 | 10549.5 |
| putative flippase gtra (transmembrane translocase of bactoprenol-linked glucose) | SAMN05421847_1497 | Not Available | Positive | 1555306 - 1555764 | 17648.4 |
| 1-acyl-sn-glycerol-3-phosphate acyltransferase | SAMN05421847_1498 | Not Available | Positive | 1555777 - 1556514 | 28744.7 |
| hypothetical protein | SAMN05421847_1499 | Not Available | Positive | 1556544 - 1558298 | 64130.3 |
| protein of unknown function | SAMN05421847_1500 | Not Available | Positive | 1558288 - 1559352 | 41407.5 |
| hypothetical protein | SAMN05421847_1501 | Not Available | Negative | 1560146 - 1560355 | 8101.23 |
| predicted purr-regulated permease perm | SAMN05421847_1502 | Not Available | Negative | 1560366 - 1561451 | 40512.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
