Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| atp-dependent clp protease atp-binding subunit clpb | SAMN05421847_1483 | Not Available | Positive | 1528545 - 1531136 | 97614.7 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN05421847_1484 | Not Available | Positive | 1531444 - 1532022 | 22526.8 |
| gliding motility-associated c-terminal domain-containing protein | SAMN05421847_1485 | Not Available | Negative | 1532212 - 1535784 | 125466.0 |
| hypothetical protein | SAMN05421847_1486 | Not Available | Negative | 1535781 - 1536110 | 12790.3 |
| hypothetical protein | SAMN05421847_1487 | Not Available | Negative | 1536300 - 1538525 | 83705.2 |
| hypothetical protein | SAMN05421847_1488 | Not Available | Positive | 1538669 - 1539082 | 15742.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421847_1489 | Not Available | Negative | 1539090 - 1539971 | 32131.0 |
| cell surface protein spra | SAMN05421847_1490 | Not Available | Negative | 1540278 - 1547387 | 266232.0 |
| holliday junction dna helicase subunit ruva | SAMN05421847_1491 | Not Available | Negative | 1547391 - 1547975 | 21430.4 |
| cytochrome bd-i ubiquinol oxidase subunit 2 apoprotein | SAMN05421847_1492 | Not Available | Negative | 1548400 - 1549437 | 38755.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
