Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| Trna-gln | Not Available | Not Available | Positive | 1498772 - 1498845 | Not Available |
| recombination protein reca | SAMN05421847_1452 | Not Available | Positive | 1499001 - 1500008 | 35920.5 |
| methionyl-trna formyltransferase | SAMN05421847_1453 | Not Available | Negative | 1500065 - 1501012 | 35438.8 |
| atp-dependent dna helicase recq | SAMN05421847_1454 | Not Available | Negative | 1501022 - 1502926 | 73434.5 |
| ompa-ompf porin, oop family | SAMN05421847_1455 | Not Available | Negative | 1503005 - 1504453 | 52782.7 |
| ompa-ompf porin, oop family | SAMN05421847_1456 | Not Available | Negative | 1504566 - 1505672 | 40766.8 |
| 2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinase | SAMN05421847_1457 | Not Available | Negative | 1505688 - 1506113 | 16063.8 |
| protease-4 | SAMN05421847_1458 | Not Available | Positive | 1506138 - 1507892 | 65056.9 |
| uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein family | SAMN05421847_1459 | Not Available | Negative | 1507954 - 1508214 | 8667.22 |
| signal recognition particle-docking protein ftsy | SAMN05421847_1460 | Not Available | Negative | 1508322 - 1509278 | 34788.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
