Chryseobacterium humi strain DSM 21580

rodaerobic

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Flavobacteriia

Order

Flavobacteriales

Family

Weeksellaceae

Genus

Halpernia

Description

Chryseobacterium humi strain DSM 21580 is a Gram-negative, non-motile bacterium characterized by its rod shape. This strain is aerobic, requiring oxygen for growth, and thrives optimally at a temperature of 29°C, placing it within the mesophilic temperature range. The genetic makeup of this strain is indicated by the presence of a single replicon, and its genomic data can be accessed under the accession number FNUS00000000.1. The traits of Chryseobacterium humi suggest a role in various ecological niches, particularly in environments where aerobic conditions prevail. Its mesophilic nature indicates adaptability to moderate temperature ranges, which are common in many terrestrial ecosystems. As a member of the Chryseobacterium genus, this strain may contribute to the decomposition of organic matter, playing a potential role in nutrient cycling within its habitat. Understanding the ecological role of such bacteria is crucial, as they can influence soil health and the overall functioning of ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassFlavobacteriia
OrderFlavobacteriales
FamilyWeeksellaceae
GenusHalpernia
SpeciesHalpernia humi
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature29
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Chryseobacterium humi strain DSM 21580 genome assembly, contig:

Gene Summary

Adenine Count

1047777 bp

Thymine Count

1041008 bp

Guanine Count

517458 bp

Cytosine Count

514943 bp

Genome Length

3121186 bp

Protein-coding Genes

2872 genes

Non-Coding Genes

38 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Trna-glnNot AvailableNot AvailablePositive1498772 - 1498845Not Available
recombination protein recaSAMN05421847_1452Not AvailablePositive1499001 - 150000835920.5
methionyl-trna formyltransferaseSAMN05421847_1453Not AvailableNegative1500065 - 150101235438.8
atp-dependent dna helicase recqSAMN05421847_1454Not AvailableNegative1501022 - 150292673434.5
ompa-ompf porin, oop familySAMN05421847_1455Not AvailableNegative1503005 - 150445352782.7
ompa-ompf porin, oop familySAMN05421847_1456Not AvailableNegative1504566 - 150567240766.8
2-amino-4-hydroxy-6- hydroxymethyldihydropteridinediphosphokinaseSAMN05421847_1457Not AvailableNegative1505688 - 150611316063.8
protease-4SAMN05421847_1458Not AvailablePositive1506138 - 150789265056.9
uncharacterized membrane protein yeaq/ymge, transglycosylase-associated protein familySAMN05421847_1459Not AvailableNegative1507954 - 15082148667.22
signal recognition particle-docking protein ftsySAMN05421847_1460Not AvailableNegative1508322 - 150927834788.9

Displaying genes 1401 – 1410 of 2910 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.