Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_1441 | Not Available | Positive | 1483427 - 1483792 | 14395.7 |
| bacteroides conjugative transposon tram protein | SAMN05421847_1442 | Not Available | Positive | 1483782 - 1485002 | 45992.6 |
| bacteroides conjugative transposon tran protein | SAMN05421847_1443 | Not Available | Positive | 1484995 - 1485864 | 33364.6 |
| hypothetical protein | SAMN05421847_1444 | Not Available | Positive | 1485870 - 1486103 | 9167.36 |
| type iv secretion-system coupling protein dna-binding domain-containing protein | SAMN05421847_1445 | Not Available | Positive | 1486111 - 1488099 | 74593.5 |
| peptidase family m23 | SAMN05421847_1446 | Not Available | Positive | 1488111 - 1488950 | 31330.9 |
| hypothetical protein | SAMN05421847_1447 | Not Available | Positive | 1488940 - 1489635 | 26909.6 |
| radc-like jab domain-containing protein | SAMN05421847_1448 | Not Available | Positive | 1489646 - 1492234 | 98316.6 |
| hypothetical protein | SAMN05421847_1449 | Not Available | Positive | 1492313 - 1493023 | 27657.2 |
| type i restriction-modification system, dna methylase subunit | SAMN05421847_1450 | Not Available | Positive | 1493023 - 1498662 | 215226.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
