Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| protein of unknown function | SAMN05421847_1349 | Not Available | Positive | 1388250 - 1388726 | 16868.3 |
| preprotein translocase subunit yajc | SAMN05421847_1350 | Not Available | Positive | 1388737 - 1389057 | 11867.9 |
| amino acid:proton symporter, abt family | SAMN05421847_1351 | Not Available | Positive | 1389297 - 1390592 | 46473.6 |
| d-tyrosyl-trna(tyr) deacylase | SAMN05421847_1352 | Not Available | Negative | 1390849 - 1391298 | 16658.3 |
| hypothetical protein | SAMN05421847_1353 | Not Available | Negative | 1391309 - 1391761 | 16648.8 |
| transcription elongation factor grea | SAMN05421847_1354 | Not Available | Positive | 1391859 - 1392329 | 17371.0 |
| histidine triad (hit) family protein | SAMN05421847_1355 | Not Available | Positive | 1392354 - 1392743 | 14770.2 |
| atp-dependent clp protease atp-binding subunit clpx | SAMN05421847_1356 | Not Available | Positive | 1392782 - 1393945 | 43644.9 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1357 | Not Available | Positive | 1394068 - 1395978 | 69041.7 |
| hypothetical protein | SAMN05421847_1358 | Not Available | Positive | 1396010 - 1396252 | 8460.66 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
