Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, tetr family | SAMN05421847_1327 | Not Available | Positive | 1369670 - 1370296 | 24406.6 |
| beta-barrel assembly machine subunit bamd | SAMN05421847_1328 | Not Available | Positive | 1370346 - 1371392 | 40230.8 |
| rna polymerase rpb6 | SAMN05421847_1329 | Not Available | Positive | 1371434 - 1371757 | 12604.9 |
| phosphopantothenoylcysteine decarboxylase / phosphopantothenate--cysteine ligase | SAMN05421847_1330 | Not Available | Positive | 1371946 - 1373145 | 44119.4 |
| protein of unknown function | SAMN05421847_1331 | Not Available | Positive | 1373339 - 1374244 | 34533.8 |
| dna repair protein recn (recombination protein n) | SAMN05421847_1332 | Not Available | Positive | 1374315 - 1375964 | 62487.7 |
| hypothetical protein | SAMN05421847_1333 | Not Available | Positive | 1376012 - 1377475 | 55141.0 |
| abc-2 type transport system atp-binding protein | SAMN05421847_1334 | Not Available | Positive | 1377494 - 1378201 | 26094.3 |
| hypothetical protein | SAMN05421847_1335 | Not Available | Positive | 1378234 - 1378944 | 27696.1 |
| fumarase, class ii | SAMN05421847_1336 | Not Available | Negative | 1379083 - 1380477 | 50259.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
