Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 16 | SAMN05421847_1274 | Not Available | Positive | 1319460 - 1320527 | 38659.9 |
| glucosylceramidase | SAMN05421847_1275 | Not Available | Positive | 1320544 - 1321998 | 52453.1 |
| glucosylceramidase | SAMN05421847_1276 | Not Available | Positive | 1322097 - 1323539 | 55009.1 |
| cytochrome c peroxidase | SAMN05421847_1277 | Not Available | Negative | 1323697 - 1324869 | 43748.7 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1278 | Not Available | Positive | 1324927 - 1325982 | 37254.3 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1279 | Not Available | Positive | 1326093 - 1327145 | 37049.9 |
| starch-binding associating with outer membrane | SAMN05421847_1280 | Not Available | Negative | 1327230 - 1328651 | 52979.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421847_1281 | Not Available | Negative | 1328656 - 1331496 | 105329.0 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1282 | Not Available | Negative | 1331503 - 1332921 | 50282.0 |
| hypothetical protein | SAMN05421847_1283 | Not Available | Positive | 1333107 - 1333343 | 8865.22 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
