Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| succinate dehydrogenase / fumarate reductase cytochrome b subunit | SAMN05421847_1242 | Not Available | Negative | 1285280 - 1285942 | 25148.0 |
| competence protein comec | SAMN05421847_1243 | Not Available | Negative | 1286041 - 1287813 | 68980.4 |
| lipid-a-disaccharide synthase | SAMN05421847_1244 | Not Available | Negative | 1287814 - 1288926 | 42557.0 |
| protein of unknown function | SAMN05421847_1245 | Not Available | Positive | 1289257 - 1289766 | 19170.5 |
| ribosomal small subunit protein bthx | SAMN05421847_1246 | Not Available | Positive | 1289855 - 1290109 | 9233.34 |
| hypothetical protein | SAMN05421847_1247 | Not Available | Negative | 1290146 - 1290817 | 22127.2 |
| aspartyl-trna synthetase | SAMN05421847_1248 | Not Available | Positive | 1291056 - 1292807 | 66870.2 |
| nyn domain-containing protein | SAMN05421847_1249 | Not Available | Positive | 1292924 - 1293538 | 23531.5 |
| dihydroorotate oxidase b, catalytic subunit | SAMN05421847_1251 | Not Available | Positive | 1293714 - 1294652 | 34676.6 |
| holliday junction endonuclease ruvc | SAMN05421847_1252 | Not Available | Negative | 1294752 - 1295306 | 20373.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
