Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| putative endonuclease | SAMN05421847_0110 | Not Available | Negative | 100193 - 100534 | 13653.5 |
| protein of unknown function | SAMN05421847_0111 | Not Available | Positive | 100659 - 101237 | 22411.1 |
| 5-(carboxyamino)imidazole ribonucleotide synthase | SAMN05421847_0112 | Not Available | Positive | 101268 - 102377 | 41498.6 |
| dna helicase-2 / atp-dependent dna helicase pcra | SAMN05421847_0113 | Not Available | Positive | 102772 - 105102 | 88475.6 |
| hypothetical protein | SAMN05421847_0114 | Not Available | Positive | 105142 - 105690 | 21371.7 |
| dipeptidase d | SAMN05421847_0115 | Not Available | Negative | 105825 - 107270 | 52441.9 |
| l,d-transpeptidase catalytic domain | SAMN05421847_0116 | Not Available | Positive | 107530 - 108480 | 36379.0 |
| hypothetical protein | SAMN05421847_0117 | Not Available | Negative | 108464 - 109003 | 20857.4 |
| pdz domain-containing protein | SAMN05421847_0118 | Not Available | Negative | 109005 - 110339 | 51073.7 |
| abc-2 type transport system atp-binding protein | SAMN05421847_0119 | Not Available | Positive | 110451 - 111365 | 34453.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
