Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| ring-1,2-phenylacetyl-coa epoxidase subunit paab | SAMN05421847_1221 | Not Available | Negative | 1256489 - 1256770 | 10616.6 |
| imidazolonepropionase | SAMN05421847_1222 | Not Available | Negative | 1256776 - 1258020 | 45556.0 |
| fucose permease | SAMN05421847_1223 | Not Available | Negative | 1258070 - 1259239 | 43412.0 |
| holliday junction dna helicase subunit ruvb | SAMN05421847_1224 | Not Available | Positive | 1259409 - 1260431 | 38084.1 |
| glyoxylase, beta-lactamase superfamily ii | SAMN05421847_1225 | Not Available | Positive | 1260665 - 1261531 | 33096.5 |
| dephospho-coa kinase | SAMN05421847_1226 | Not Available | Positive | 1261535 - 1262152 | 23509.2 |
| por secretion system c-terminal sorting domain-containing protein | SAMN05421847_1227 | Not Available | Negative | 1262227 - 1265175 | 106537.0 |
| hypothetical protein | SAMN05421847_1228 | Not Available | Negative | 1265320 - 1265979 | 24620.5 |
| hypothetical protein | SAMN05421847_1229 | Not Available | Negative | 1265945 - 1266421 | 17703.5 |
| protein of unknown function | SAMN05421847_1230 | Not Available | Negative | 1266421 - 1268904 | 94968.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
