Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421847_1146 | Not Available | Positive | 1176632 - 1177240 | 23452.0 |
| gh3 auxin-responsive promoter | SAMN05421847_1148 | Not Available | Positive | 1177424 - 1178935 | 57948.8 |
| tripeptide aminopeptidase | SAMN05421847_1149 | Not Available | Positive | 1178984 - 1180243 | 46949.3 |
| thiamine-phosphate kinase | SAMN05421847_1150 | Not Available | Negative | 1180342 - 1181385 | 37672.9 |
| acyl-coa thioester hydrolase | SAMN05421847_1151 | Not Available | Negative | 1181402 - 1181938 | 20773.6 |
| hypothetical protein | SAMN05421847_1152 | Not Available | Positive | 1182021 - 1183241 | 46159.9 |
| hypothetical protein | SAMN05421847_1153 | Not Available | Positive | 1183296 - 1183619 | 11991.1 |
| protein of unknown function | SAMN05421847_1154 | Not Available | Negative | 1183600 - 1183992 | 15171.3 |
| dna mismatch repair protein muts | SAMN05421847_1156 | Not Available | Negative | 1184829 - 1187408 | 97605.3 |
| spou rrna methylase family protein | SAMN05421847_1157 | Not Available | Positive | 1187466 - 1188002 | 20101.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
