Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Flavobacteriia
Order
Flavobacteriales
Family
Weeksellaceae
Genus
Halpernia
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Flavobacteriia |
| Order | Flavobacteriales |
| Family | Weeksellaceae |
| Genus | Halpernia |
| Species | Halpernia humi |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1047777 bp
Thymine Count
1041008 bp
Guanine Count
517458 bp
Cytosine Count
514943 bp
Genome Length
3121186 bp
Protein-coding Genes
2872 genes
Non-Coding Genes
38 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| phage shock protein c (pspc) family protein | SAMN05421847_1054 | Not Available | Positive | 1085234 - 1085470 | 9360.9 |
| hypothetical protein | SAMN05421847_1055 | Not Available | Negative | 1085536 - 1086267 | 26884.7 |
| hypothetical protein | SAMN05421847_1056 | Not Available | Negative | 1086311 - 1087093 | 30148.6 |
| carboxypepd_reg-like domain-containing protein | SAMN05421847_1057 | Not Available | Negative | 1087090 - 1087866 | 29747.9 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN05421847_1058 | Not Available | Positive | 1088433 - 1091594 | 123043.0 |
| protein of unknown function | SAMN05421847_1059 | Not Available | Negative | 1091646 - 1093580 | 74386.6 |
| protein of unknown function | SAMN05421847_1060 | Not Available | Negative | 1093593 - 1095479 | 71598.9 |
| hypothetical protein | SAMN05421847_1061 | Not Available | Negative | 1095590 - 1095985 | 15177.7 |
| hypothetical protein | SAMN05421847_1062 | Not Available | Negative | 1096149 - 1097177 | 40663.2 |
| 4-alpha-glucanotransferase | SAMN05421847_1063 | Not Available | Negative | 1097413 - 1100070 | 104711.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
