Amycolatopsis pretoriensis strain DSM 44654

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis pretoriensis strain DSM 44654 is a notable bacterium characterized by the presence of flagella, which suggests a capability for motility. This trait may play a role in the organism's ecological interactions and its ability to colonize various environments. The strain is documented under the accession number FNUJ00000000.1, which indicates its genetic sequencing information is available for further study. In terms of genomic structure, A. pretoriensis DSM 44654 possesses a single replicon. This is indicative of a streamlined genomic organization, which can influence the bacterium's metabolic processes and adaptability to its surroundings. The presence of a single replicon is a feature commonly observed in many members of the Actinobacteria phylum, to which Amycolatopsis belongs. The combination of flagellar motility and a single replicon may provide insights into the ecological niche of A. pretoriensis DSM 44654, suggesting it could effectively navigate through diverse environments, enhancing its survival and competitive abilities. Such traits may allow it to thrive in soil or other habitats where it can contribute to the microbiome dynamics, facilitate nutrient cycling, or engage in interactions with other microorganisms. Understanding these characteristics can help elucidate the ecological roles of A. pretoriensis and its potential applications in biotechnology or bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis pretoriensis
Strainstrain DSM 44654

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis pretoriensis strain DSM 44654 genome assembly,

Gene Summary

Adenine Count

1487983 bp

Thymine Count

1480820 bp

Guanine Count

3655551 bp

Cytosine Count

3674672 bp

Genome Length

10299026 bp

Protein-coding Genes

9764 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phytanoyl-coa dioxygenase (phyh)SAMN05421837_101256Not AvailablePositive257549 - 25838830616.1
hypothetical proteinSAMN05421837_101257Not AvailablePositive258429 - 2585694727.01
hypothetical proteinSAMN05421837_101258Not AvailableNegative258573 - 25900716034.8
dna ligase (nad+)SAMN05421837_101259Not AvailableNegative259024 - 26103971820.6
carboxyvinyl-carboxyphosphonate phosphorylmutaseSAMN05421837_101260Not AvailableNegative261052 - 26194531407.9
sialidase-1SAMN05421837_101261Not AvailableNegative261951 - 26315041798.8
hypothetical proteinSAMN05421837_101262Not AvailableNegative263568 - 26401416295.4
methyltransferase, fkbm familySAMN05421837_101263Not AvailablePositive264025 - 26489432318.7
probable f420-dependent oxidoreductase, rv2161c familySAMN05421837_101264Not AvailablePositive264936 - 26579330463.5
f5/8 type c domain-containing proteinSAMN05421837_101265Not AvailablePositive265913 - 269596127187.0

Displaying genes 311 – 320 of 9871 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.