Amycolatopsis pretoriensis strain DSM 44654

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Pseudonocardiales

Family

Pseudonocardiaceae

Genus

Amycolatopsis

Description

Amycolatopsis pretoriensis strain DSM 44654 is a notable bacterium characterized by the presence of flagella, which suggests a capability for motility. This trait may play a role in the organism's ecological interactions and its ability to colonize various environments. The strain is documented under the accession number FNUJ00000000.1, which indicates its genetic sequencing information is available for further study. In terms of genomic structure, A. pretoriensis DSM 44654 possesses a single replicon. This is indicative of a streamlined genomic organization, which can influence the bacterium's metabolic processes and adaptability to its surroundings. The presence of a single replicon is a feature commonly observed in many members of the Actinobacteria phylum, to which Amycolatopsis belongs. The combination of flagellar motility and a single replicon may provide insights into the ecological niche of A. pretoriensis DSM 44654, suggesting it could effectively navigate through diverse environments, enhancing its survival and competitive abilities. Such traits may allow it to thrive in soil or other habitats where it can contribute to the microbiome dynamics, facilitate nutrient cycling, or engage in interactions with other microorganisms. Understanding these characteristics can help elucidate the ecological roles of A. pretoriensis and its potential applications in biotechnology or bioremediation efforts.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderPseudonocardiales
FamilyPseudonocardiaceae
GenusAmycolatopsis
SpeciesAmycolatopsis pretoriensis
Strainstrain DSM 44654

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceYes
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Amycolatopsis pretoriensis strain DSM 44654 genome assembly,

Gene Summary

Adenine Count

1487983 bp

Thymine Count

1480820 bp

Guanine Count

3655551 bp

Cytosine Count

3674672 bp

Genome Length

10299026 bp

Protein-coding Genes

9764 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
Baseplate assembly proteinSAMN05421837_101117Not AvailablePositive114215 - 11625470351.8
phage tail protein, p2 protein i familySAMN05421837_101118Not AvailablePositive116251 - 11816767970.6
phage tail protein domain-containing proteinSAMN05421837_1011200Not AvailableNegative1264434 - 126497319178.0
Baseplate assembly proteinSAMN05421837_1011201Not AvailableNegative1264970 - 126693170758.1
Base plate wedge subunitSAMN05421837_1011202Not AvailableNegative1266931 - 126734114929.8
Baseplate puncturing deviceSAMN05421837_1011203Not AvailableNegative1267343 - 12676248845.05
Tail proteinSAMN05421837_1011204Not AvailableNegative1267637 - 126946063996.6
lysm domain-containing proteinSAMN05421837_1011205Not AvailableNegative1269453 - 127021427092.1
conserved hypothetical phage tail region proteinSAMN05421837_1011206Not AvailableNegative1270220 - 127066616020.1
Hypothetical proteinSAMN05421837_107322Not AvailablePositive6544892 - 654520911530.8

Displaying genes 11 – 20 of 9871 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.