Pseudomonas deceptionensis strain LMG 25555

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas deceptionensis strain LMG 25555 is characterized by having a single replicon, which is a notable trait for its genetic organization. The strain is cataloged under the accession number FNUD00000000.1, indicating its quality and availability in genomic databases for further research and analysis. As a member of the Pseudomonas genus, which is well-known for its metabolic versatility, Pseudomonas deceptionensis may possess various ecological roles and capabilities. Members of this genus are often found in diverse environments, including soil, water, and plant surfaces, where they contribute to nutrient cycling and can interact with other microorganisms. The single replicon characteristic suggests a streamlined genetic architecture, which could influence the strain's adaptability and survival in its ecological niche. This could allow for efficient regulation of gene expression and replication processes, potentially enhancing its ability to respond to environmental stresses or changes. Overall, Pseudomonas deceptionensis strain LMG 25555 may play a significant role in its ecosystem, leveraging its genetic traits for survival and interaction within microbial communities. Further studies on this strain could provide deeper insights into its ecological functions and potential applications in biotechnology or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas deceptionensis
Strainstrain LMG 25555

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas deceptionensis strain LMG 25555
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas deceptionensis strain LMG 25555 genome assembly,

Gene Summary

Adenine Count

1056969 bp

Thymine Count

1057694 bp

Guanine Count

1491757 bp

Cytosine Count

1490342 bp

Genome Length

5096762 bp

Protein-coding Genes

4530 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
4-aminobutyrate aminotransferaseSAMN04489800_1819Not AvailableNegative1972459 - 197385352192.5
haloacid dehalogenase superfamily, subfamily ib, phosphoserine phosphatase-like/2,3-diketo-5-methylthio-1-phosphopentane phosphataseSAMN04489800_1820Not AvailableNegative1973846 - 197454125588.2
outer membrane scaffolding protein for murein synthesis, mipa/ompv familySAMN04489800_1821Not AvailablePositive1974746 - 197553427343.8
membrane protein glpmSAMN04489800_1822Not AvailableNegative1975591 - 197592612211.6
two-component system, response regulator aaurSAMN04489800_1823Not AvailableNegative1975926 - 197725149139.9
two-component system, sensor histidine kinase aausSAMN04489800_1824Not AvailableNegative1977248 - 197915270772.7
l-glutamate abc transporter atp-binding protein /l-aspartate abc transporter atp-binding proteinSAMN04489800_1825Not AvailableNegative1979312 - 198004626937.9
l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane proteinSAMN04489800_1826Not AvailableNegative1980043 - 198071724654.1
l-glutamate abc transporter membrane protein /l-aspartate abc transporter membrane proteinSAMN04489800_1827Not AvailableNegative1980717 - 198146327755.4
l-glutamate-binding protein /l-aspartate-binding proteinSAMN04489800_1828Not AvailableNegative1981665 - 198259433594.4

Displaying genes 1891 – 1900 of 4704 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm00347382-oxobutanoic acidC4H5O3Chemical structure of 2-oxobutanoic acidNULL
Average101.0807Da
Monoisotopic101.023869026Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.