Pseudomonas deceptionensis strain LMG 25555

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas deceptionensis strain LMG 25555 is characterized by having a single replicon, which is a notable trait for its genetic organization. The strain is cataloged under the accession number FNUD00000000.1, indicating its quality and availability in genomic databases for further research and analysis. As a member of the Pseudomonas genus, which is well-known for its metabolic versatility, Pseudomonas deceptionensis may possess various ecological roles and capabilities. Members of this genus are often found in diverse environments, including soil, water, and plant surfaces, where they contribute to nutrient cycling and can interact with other microorganisms. The single replicon characteristic suggests a streamlined genetic architecture, which could influence the strain's adaptability and survival in its ecological niche. This could allow for efficient regulation of gene expression and replication processes, potentially enhancing its ability to respond to environmental stresses or changes. Overall, Pseudomonas deceptionensis strain LMG 25555 may play a significant role in its ecosystem, leveraging its genetic traits for survival and interaction within microbial communities. Further studies on this strain could provide deeper insights into its ecological functions and potential applications in biotechnology or bioremediation.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas deceptionensis
Strainstrain LMG 25555

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas deceptionensis strain LMG 25555
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas deceptionensis strain LMG 25555 genome assembly,

Gene Summary

Adenine Count

1056969 bp

Thymine Count

1057694 bp

Guanine Count

1491757 bp

Cytosine Count

1490342 bp

Genome Length

5096762 bp

Protein-coding Genes

4530 genes

Non-Coding Genes

174 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein n-acetyltransferase, rimj/riml familySAMN04489800_1483Not AvailablePositive1599221 - 159979021350.6
acyl-coa thioesterase-2SAMN04489800_1484Not AvailablePositive1599875 - 160074432398.5
haloacid dehalogenase superfamily, subfamily ia, variant 3 with third motif having dd or ed/haloacid dehalogenase superfamily, subfamily ia, variant 1 with third motif having dx(3-4)d or dx(3-4)eSAMN04489800_1485Not AvailablePositive1600741 - 160133121805.1
hypothetical proteinSAMN04489800_1486Not AvailableNegative1601444 - 160233732232.2
lysr family transcriptional regulator, pca operon transcriptional activatorSAMN04489800_1487Not AvailablePositive1602623 - 160355233600.9
protocatechuate 3,4-dioxygenase, beta subunitSAMN04489800_1488Not AvailablePositive1603650 - 160436926964.2
protocatechuate 3,4-dioxygenase, alpha subunitSAMN04489800_1489Not AvailablePositive1604381 - 160498622222.1
hypothetical proteinSAMN04489800_1490Not AvailableNegative1605155 - 16052924954.08
permease of the drug/metabolite transporter (dmt) superfamilySAMN04489800_1492Not AvailableNegative1605685 - 160656931687.8
mfs transporter, acs family, hexuronate transporterSAMN04489800_1493Not AvailableNegative1606633 - 160796148478.3

Displaying genes 1561 – 1570 of 4704 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm00347382-oxobutanoic acidC4H5O3Chemical structure of 2-oxobutanoic acidNULL
Average101.0807Da
Monoisotopic101.023869026Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.