Pseudomonas panacis strain BS2778

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas panacis strain BS2778 is a Gram-negative, rod-shaped bacterium that thrives in metal-contaminated soil environments. This organism is classified as aerobic, requiring oxygen for its metabolic processes. It exhibits psychrotolerant characteristics, with an optimal growth temperature of 16°C, allowing it to survive and function effectively in cooler conditions. Strain BS2778 possesses a single replicon, indicating a streamlined genetic structure, which may facilitate efficient replication and adaptation in its specific habitat. Notably, this bacterium does not form spores, which suggests that it relies on other survival strategies in hostile environments. A significant aspect of Pseudomonas panacis strain BS2778 is its association with Brassica oleracea var. italica, commonly known as broccoli. This relationship underscores the potential for bioremediation applications, where the bacterium could be harnessed to mitigate the effects of metal contamination in agricultural soils, thereby promoting healthier crop production. The interaction between this strain and its host plant may also contribute to soil health and ecosystem stability by enhancing nutrient cycling and reducing the bioavailability of toxic metals. Overall, Pseudomonas panacis strain BS2778 exemplifies an organism adapted to extreme conditions, with implications for ecological restoration and sustainable agricultural practices in contaminated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas marginalis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas panacis strain BS2778
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
Habitatmetal contaminated soil
Biotic relationshipNot Available
Host(s)Brassica oleracea var. italica
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas panacis strain BS2778 genome assembly, contig:

Gene Summary

Adenine Count

1353578 bp

Thymine Count

1375659 bp

Guanine Count

2135231 bp

Cytosine Count

2100551 bp

Genome Length

6965019 bp

Protein-coding Genes

6106 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
udp-n-acetylmuramate: l-alanyl-gamma-d-glutamyl-meso-diaminopimelate ligaseSAMN04490199_0483Not AvailablePositive512018 - 51336748350.9
4-hydroxy-3-polyprenylbenzoate decarboxylaseSAMN04490199_0484Not AvailablePositive513364 - 51399322639.6
uncharacterized conserved protein ycekSAMN04490199_0485Not AvailablePositive513986 - 5142709464.73
uncharacterized conserved protein ybjt, contains nad(p)-binding and duf2867 domainsSAMN04490199_0486Not AvailableNegative514330 - 51497123432.8
uncharacterized conserved proteinSAMN04490199_0487Not AvailableNegative515002 - 51672062265.6
acyl dehydrataseSAMN04490199_0488Not AvailableNegative516916 - 51737116793.5
putative effector of murein hydrolase lrga, upf0299 familySAMN04490199_0489Not AvailablePositive517531 - 51789313015.8
tigr00659 family proteinSAMN04490199_0490Not AvailablePositive517890 - 51860625213.9
hypothetical proteinSAMN04490199_0491Not AvailablePositive518628 - 51921821779.1
hypothetical proteinSAMN04490199_0492Not AvailablePositive519321 - 5195368075.58

Displaying genes 521 – 530 of 6223 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ChlorosisCausesPMC12847849
Internal stem discolorationCausesPMC12847849

Displaying health effects 1 – 2 of 2 in total