Pseudomonas panacis strain BS2778

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas panacis strain BS2778 is a Gram-negative, rod-shaped bacterium that thrives in metal-contaminated soil environments. This organism is classified as aerobic, requiring oxygen for its metabolic processes. It exhibits psychrotolerant characteristics, with an optimal growth temperature of 16°C, allowing it to survive and function effectively in cooler conditions. Strain BS2778 possesses a single replicon, indicating a streamlined genetic structure, which may facilitate efficient replication and adaptation in its specific habitat. Notably, this bacterium does not form spores, which suggests that it relies on other survival strategies in hostile environments. A significant aspect of Pseudomonas panacis strain BS2778 is its association with Brassica oleracea var. italica, commonly known as broccoli. This relationship underscores the potential for bioremediation applications, where the bacterium could be harnessed to mitigate the effects of metal contamination in agricultural soils, thereby promoting healthier crop production. The interaction between this strain and its host plant may also contribute to soil health and ecosystem stability by enhancing nutrient cycling and reducing the bioavailability of toxic metals. Overall, Pseudomonas panacis strain BS2778 exemplifies an organism adapted to extreme conditions, with implications for ecological restoration and sustainable agricultural practices in contaminated environments.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas marginalis
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas panacis strain BS2778
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature16
Temperature rangepsychrotolerant
Habitatmetal contaminated soil
Biotic relationshipNot Available
Host(s)Brassica oleracea var. italica
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas panacis strain BS2778 genome assembly, contig:

Gene Summary

Adenine Count

1353578 bp

Thymine Count

1375659 bp

Guanine Count

2135231 bp

Cytosine Count

2100551 bp

Genome Length

6965019 bp

Protein-coding Genes

6106 genes

Non-Coding Genes

117 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
isocitrate dehydrogenase kinase/phosphataseSAMN04490199_0189Not AvailablePositive210424 - 21214565848.5
atp-dependent helicase hrpaSAMN04490199_0190Not AvailablePositive212216 - 216127147348.0
beta-ketodecanoyl-[acyl-carrier-protein] synthaseSAMN04490199_0191Not AvailablePositive216356 - 21747740430.1
rna polymerase sigma-70 factor, ecf subfamilySAMN04490199_0192Not AvailablePositive217564 - 21817823143.6
putative zinc-fingerSAMN04490199_0193Not AvailablePositive218172 - 2184059140.31
putative porinSAMN04490199_0194Not AvailableNegative218526 - 21984848291.1
hypothetical proteinSAMN04490199_0195Not AvailablePositive220134 - 22125842525.3
aquaporin zSAMN04490199_0196Not AvailableNegative221271 - 22197223702.6
atp-binding cassette, subfamily b, multidrug efflux pumpSAMN04490199_0197Not AvailableNegative222150 - 22398267377.3
peptidyl-prolyl cis-trans isomerase a (cyclophilin a)SAMN04490199_0198Not AvailableNegative224066 - 22462920105.2

Displaying genes 231 – 240 of 6223 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

Health ConditionRelationReference
ChlorosisCausesPMC12847849
Internal stem discolorationCausesPMC12847849

Displaying health effects 1 – 2 of 2 in total