Pseudomonas anguilliseptica strain DSM 12111

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas anguilliseptica strain DSM 12111 is an aerobic bacterium primarily associated with the host Anguilla japonica, commonly known as the Japanese eel. This strain features a single replicon, which indicates that it possesses a streamlined genetic structure, potentially contributing to its adaptability and survival in various environments. The strain is cataloged under the accession number FNSC00000000.1, which provides a reference for genomic studies and further research into its characteristics and behaviors. Understanding the specific interactions between Pseudomonas anguilliseptica and its aquatic host can shed light on the ecological dynamics within freshwater ecosystems, particularly those involving eels. Given its aerobic nature, DSM 12111 likely plays a role in the biogeochemical cycles of its aquatic environment, potentially influencing nutrient cycling and organic matter decomposition. The relationship between this bacterium and Anguilla japonica could also be significant in terms of the health and disease dynamics within eel populations, emphasizing the importance of microbial interactions in aquatic ecosystems. This highlights the ecological role of Pseudomonas anguilliseptica as both a participant in and influencer of its host's environment and wellbeing.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas anguilliseptica
Strainstrain DSM 12111

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas anguilliseptica strain DSM 12111
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas anguilliseptica strain DSM 12111 genome assembly,

Gene Summary

Adenine Count

1043696 bp

Thymine Count

1037403 bp

Guanine Count

1572035 bp

Cytosine Count

1576483 bp

Genome Length

5229617 bp

Protein-coding Genes

4353 genes

Non-Coding Genes

411 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
l-leucine-binding protein /l-isoleucine-binding protein /l-valine-binding proteinSAMN05421553_0018Not AvailablePositive19616 - 2073739169.5
l-leucine abc transporter membrane protein /l-isoleucine abc transporter membrane protein /l-valine abc transporter membrane proteinSAMN05421553_0019Not AvailablePositive20855 - 2177832471.8
l-leucine abc transporter membrane protein /l-isoleucine abc transporter membrane protein /l-valine abc transporter membrane proteinSAMN05421553_0020Not AvailablePositive21775 - 2304346177.3
l-leucine abc transporter atp-binding protein /l-isoleucine abc transporter atp-binding protein /l-valine abc transporter atp-binding proteinSAMN05421553_0021Not AvailablePositive23040 - 2380728247.4
l-leucine abc transporter atp-binding protein /l-isoleucine abc transporter atp-binding protein /l-valine abc transporter atp-binding proteinSAMN05421553_0022Not AvailablePositive23807 - 2450825562.1
23s rrna pseudouridine2604 synthaseSAMN05421553_0023Not AvailablePositive24663 - 2540627331.6
uncharacterized conserved protein yehs, duf1456 familySAMN05421553_0024Not AvailablePositive25454 - 2591517480.2
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05421553_0025Not AvailablePositive26037 - 2680726921.5
pp_00022SAMN05421553_0026Not AvailablePositive26847 - 27551Not Available
catechol 2,3-dioxygenaseSAMN05421553_0027Not AvailablePositive27635 - 2804815204.1

Displaying genes 441 – 450 of 4764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.