Pseudomonas anguilliseptica strain DSM 12111

aerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Pseudomonadales

Family

Pseudomonadaceae

Genus

Pseudomonas

Description

Pseudomonas anguilliseptica strain DSM 12111 is an aerobic bacterium primarily associated with the host Anguilla japonica, commonly known as the Japanese eel. This strain features a single replicon, which indicates that it possesses a streamlined genetic structure, potentially contributing to its adaptability and survival in various environments. The strain is cataloged under the accession number FNSC00000000.1, which provides a reference for genomic studies and further research into its characteristics and behaviors. Understanding the specific interactions between Pseudomonas anguilliseptica and its aquatic host can shed light on the ecological dynamics within freshwater ecosystems, particularly those involving eels. Given its aerobic nature, DSM 12111 likely plays a role in the biogeochemical cycles of its aquatic environment, potentially influencing nutrient cycling and organic matter decomposition. The relationship between this bacterium and Anguilla japonica could also be significant in terms of the health and disease dynamics within eel populations, emphasizing the importance of microbial interactions in aquatic ecosystems. This highlights the ecological role of Pseudomonas anguilliseptica as both a participant in and influencer of its host's environment and wellbeing.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderPseudomonadales
FamilyPseudomonadaceae
GenusPseudomonas
SpeciesPseudomonas anguilliseptica
Strainstrain DSM 12111

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Image of Pseudomonas anguilliseptica strain DSM 12111
Image source: Wikipedia/Wikimedia
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Anguilla japonica
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pseudomonas anguilliseptica strain DSM 12111 genome assembly,

Gene Summary

Adenine Count

1043696 bp

Thymine Count

1037403 bp

Guanine Count

1572035 bp

Cytosine Count

1576483 bp

Genome Length

5229617 bp

Protein-coding Genes

4353 genes

Non-Coding Genes

411 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
trap-type mannitol/chloroaromatic compound transport system, small permease componentSAMN05421553_0006Not AvailableNegative5511 - 601718815.6
2,4-dienoyl-coa reductaseSAMN05421553_0008Not AvailableNegative7608 - 871740452.2
transcriptional regulator, tetr familySAMN05421553_0009Not AvailableNegative8770 - 936321871.1
transposase, is4 family /transposase, is5 familySAMN05421553_0010Not AvailableNegative9672 - 1065236804.8
hd-gyp domain, c-di-gmp phosphodiesterase class ii (or its inactivated variant)SAMN05421553_0011Not AvailableNegative10799 - 1275772212.6
predicted arabinose efflux permease, mfs familySAMN05421553_0012Not AvailableNegative12867 - 1419548241.4
hypothetical proteinSAMN05421553_0013Not AvailablePositive14506 - 1670483704.4
hydroxypyruvate isomeraseSAMN05421553_0014Not AvailableNegative16772 - 1756327709.7
3-hydroxyisobutyrate dehydrogenaseSAMN05421553_0015Not AvailableNegative17698 - 1846526531.6
protein of unknown functionSAMN05421553_0016Not AvailableNegative18550 - 1891813744.2

Displaying genes 431 – 440 of 4764 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0002749ADP-alpha-D-glucoseC16H23N5O15P2Chemical structure of ADP-alpha-D-glucoseNot available
Average587.329Da
Monoisotopic587.0676862Da

Displaying 1–1 of 1 metabolites

Health Effects

No health effects information available for this bacterium.