Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. YR216 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1243614 bp
Thymine Count
1246362 bp
Guanine Count
2445666 bp
Cytosine Count
2435852 bp
Genome Length
7371494 bp
Protein-coding Genes
6957 genes
Non-Coding Genes
84 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| cation diffusion facilitator family transporter | SAMN05444680_101744 | Not Available | Positive | 778914 - 779870 | 34566.8 |
| dna-binding transcriptional regulator, lysr family | SAMN05444680_101745 | Not Available | Negative | 779860 - 780762 | 32618.8 |
| cupin domain-containing protein | SAMN05444680_101746 | Not Available | Positive | 780902 - 781279 | 13461.9 |
| snoal-like domain-containing protein | SAMN05444680_101747 | Not Available | Positive | 781352 - 781744 | 14659.7 |
| cysteine dioxygenase | SAMN05444680_101748 | Not Available | Positive | 781755 - 782324 | 20883.8 |
| hypothetical protein | SAMN05444680_101749 | Not Available | Negative | 782334 - 782468 | 4934.01 |
| polygalacturonase | SAMN05444680_101750 | Not Available | Positive | 782685 - 784754 | 71701.1 |
| feruloyl esterase | SAMN05444680_101751 | Not Available | Positive | 784948 - 786690 | 61217.7 |
| 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) | SAMN05444680_101752 | Not Available | Positive | 786698 - 787522 | 29993.8 |
| protein of unknown function | SAMN05444680_101753 | Not Available | Negative | 787560 - 788768 | 40409.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
