Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. YR216 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1243614 bp
Thymine Count
1246362 bp
Guanine Count
2445666 bp
Cytosine Count
2435852 bp
Genome Length
7371494 bp
Protein-coding Genes
6957 genes
Non-Coding Genes
84 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| tight adherence protein b | SAMN05444680_12429 | Not Available | Positive | 6738633 - 6739622 | 36870.3 |
| tight adherence protein c | SAMN05444680_12430 | Not Available | Positive | 6739633 - 6740544 | 33434.5 |
| two component transcriptional regulator, luxr family | SAMN05444680_12431 | Not Available | Negative | 6740600 - 6741286 | 25240.6 |
| histidine kinase | SAMN05444680_12432 | Not Available | Negative | 6741296 - 6742972 | 60869.8 |
| transcriptional regulator, gntr family | SAMN05444680_12433 | Not Available | Negative | 6743835 - 6745340 | 55594.2 |
| 4-aminobutyrate aminotransferase apoenzyme | SAMN05444680_12434 | Not Available | Positive | 6745459 - 6746727 | 45302.9 |
| putative spermidine/putrescine transport system atp-binding protein | SAMN05444680_12435 | Not Available | Positive | 6746751 - 6747860 | 40505.1 |
| putative spermidine/putrescine transport system substrate-binding protein | SAMN05444680_12436 | Not Available | Positive | 6747905 - 6748939 | 37593.7 |
| putative spermidine/putrescine transport system permease protein | SAMN05444680_12437 | Not Available | Positive | 6748966 - 6750285 | 47125.1 |
| putative spermidine/putrescine transport system permease protein | SAMN05444680_12438 | Not Available | Positive | 6750291 - 6751124 | 29738.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
