Variovorax sp. YR216

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR216 is a rod-shaped bacterium characterized by its single replicon structure. This trait is significant as it suggests a streamlined genetic organization, which may facilitate efficient replication and adaptability to its environment. The sequence data for this organism is available under the accession FNRO00000000.1, contributing to the understanding of its genetic makeup and potential functionalities. The rod shape of Variovorax sp. YR216 may influence its motility and ecological interactions. Rod-shaped bacteria often exhibit different behaviors in biofilm formation and nutrient acquisition compared to coccoid or filamentous forms. This morphology can affect the bacterium's ability to colonize various environments, potentially impacting its ecological role. Understanding the traits of Variovorax sp. YR216, particularly its morphology and genetic structure, provides insight into its adaptability and ecological niche. This organism may play a role in biogeochemical cycles or contribute to environmental processes due to its unique characteristics. Further research could elucidate its specific functions within microbial communities, highlighting the importance of such bacteria in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR216
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR216 genome assembly, contig: Ga0115522_149, whole

Gene Summary

Adenine Count

1243614 bp

Thymine Count

1246362 bp

Guanine Count

2445666 bp

Cytosine Count

2435852 bp

Genome Length

7371494 bp

Protein-coding Genes

6957 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protein ccma, bactofilin familySAMN05444680_11923Not AvailableNegative6208063 - 620859618180.6
uncharacterized protein, yigz familySAMN05444680_11924Not AvailableNegative6208728 - 620931520474.6
methionine biosynthesis protein metwSAMN05444680_11925Not AvailableNegative6209345 - 620992921779.3
homoserine o-acetyltransferaseSAMN05444680_11926Not AvailableNegative6209926 - 621108042381.0
putative ca2+/h+ antiporter, tmem165/gdt1 familySAMN05444680_11927Not AvailableNegative6211211 - 621177720436.6
rna recognition motif. (a.k.a. rrm, rbd, or rnp domain)SAMN05444680_11928Not AvailablePositive6212218 - 621273615967.3
short-chain dehydrogenaseSAMN05444680_11929Not AvailableNegative6212821 - 621359427172.8
lipopolysaccharide export system protein lptcSAMN05444680_11930Not AvailableNegative6213602 - 621424623668.1
3-deoxy-d-manno-octulosonate 8-phosphate phosphatase (kdo 8-p phosphatase)SAMN05444680_11931Not AvailableNegative6214243 - 621479119482.4
arabinose-5-phosphate isomeraseSAMN05444680_11932Not AvailableNegative6214791 - 621579234701.3

Displaying genes 5981 – 5990 of 7041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.