Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. YR216 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1243614 bp
Thymine Count
1246362 bp
Guanine Count
2445666 bp
Cytosine Count
2435852 bp
Genome Length
7371494 bp
Protein-coding Genes
6957 genes
Non-Coding Genes
84 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| 3,4-dihydroxyphenylacetate 2,3-dioxygenase | SAMN05444680_117141 | Not Available | Negative | 6056181 - 6056378 | 6710.85 |
| predicted phosphoesterase | SAMN05444680_1181 | Not Available | Positive | 6056475 - 6057290 | 30442.9 |
| aldehyde dehydrogenase | SAMN05444680_1182 | Not Available | Positive | 6057523 - 6059043 | 55461.5 |
| hypothetical protein | SAMN05444680_1183 | Not Available | Positive | 6059055 - 6059438 | 13928.6 |
| amino acid abc transporter substrate-binding protein, paat family | SAMN05444680_1184 | Not Available | Negative | 6059472 - 6060314 | 30138.4 |
| cytochrome c-550 pedf | SAMN05444680_1185 | Not Available | Negative | 6060324 - 6060806 | 17548.0 |
| gaf modulated sigma54 specific transcriptional regulator, fis family | SAMN05444680_1186 | Not Available | Positive | 6061060 - 6063186 | 77095.4 |
| pyrroloquinoline quinone biosynthesis protein b | SAMN05444680_1187 | Not Available | Positive | 6063576 - 6064508 | 33529.1 |
| pyrroloquinoline-quinone synthase | SAMN05444680_1188 | Not Available | Positive | 6064505 - 6065290 | 30404.9 |
| pyrroloquinoline quinone biosynthesis protein d | SAMN05444680_1189 | Not Available | Positive | 6065287 - 6065550 | 10099.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
