Variovorax sp. YR216

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR216 is a rod-shaped bacterium characterized by its single replicon structure. This trait is significant as it suggests a streamlined genetic organization, which may facilitate efficient replication and adaptability to its environment. The sequence data for this organism is available under the accession FNRO00000000.1, contributing to the understanding of its genetic makeup and potential functionalities. The rod shape of Variovorax sp. YR216 may influence its motility and ecological interactions. Rod-shaped bacteria often exhibit different behaviors in biofilm formation and nutrient acquisition compared to coccoid or filamentous forms. This morphology can affect the bacterium's ability to colonize various environments, potentially impacting its ecological role. Understanding the traits of Variovorax sp. YR216, particularly its morphology and genetic structure, provides insight into its adaptability and ecological niche. This organism may play a role in biogeochemical cycles or contribute to environmental processes due to its unique characteristics. Further research could elucidate its specific functions within microbial communities, highlighting the importance of such bacteria in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR216
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR216 genome assembly, contig: Ga0115522_149, whole

Gene Summary

Adenine Count

1243614 bp

Thymine Count

1246362 bp

Guanine Count

2445666 bp

Cytosine Count

2435852 bp

Genome Length

7371494 bp

Protein-coding Genes

6957 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
ribonuclease zSAMN05444680_112156Not AvailablePositive5180186 - 518117535711.8
cupin domain-containing proteinSAMN05444680_112157Not AvailablePositive5181221 - 518166116236.1
predicted metal-dependent hydrolase, tim-barrel foldSAMN05444680_112158Not AvailablePositive5181952 - 518283932112.6
dna-binding transcriptional regulator, gntr familySAMN05444680_112159Not AvailableNegative5183198 - 518394727507.8
3-carboxy-cis,cis-muconate cycloisomeraseSAMN05444680_112160Not AvailablePositive5184062 - 518543849584.2
aerobic c4-dicarboxylate transport proteinSAMN05444680_112161Not AvailablePositive5185457 - 518686048924.0
tripartite tricarboxylate transporter family receptorSAMN05444680_112162Not AvailablePositive5186955 - 518735614530.5
fumarase, class iiSAMN05444680_112163Not AvailablePositive5187358 - 518878850656.9
dna-binding transcriptional regulator, lysr familySAMN05444680_112164Not AvailableNegative5188884 - 518978932651.7
4,5-dopa dioxygenase extradiolSAMN05444680_112165Not AvailablePositive5190018 - 519085129214.3

Displaying genes 5011 – 5020 of 7041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.