Variovorax sp. YR216

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR216 is a rod-shaped bacterium characterized by its single replicon structure. This trait is significant as it suggests a streamlined genetic organization, which may facilitate efficient replication and adaptability to its environment. The sequence data for this organism is available under the accession FNRO00000000.1, contributing to the understanding of its genetic makeup and potential functionalities. The rod shape of Variovorax sp. YR216 may influence its motility and ecological interactions. Rod-shaped bacteria often exhibit different behaviors in biofilm formation and nutrient acquisition compared to coccoid or filamentous forms. This morphology can affect the bacterium's ability to colonize various environments, potentially impacting its ecological role. Understanding the traits of Variovorax sp. YR216, particularly its morphology and genetic structure, provides insight into its adaptability and ecological niche. This organism may play a role in biogeochemical cycles or contribute to environmental processes due to its unique characteristics. Further research could elucidate its specific functions within microbial communities, highlighting the importance of such bacteria in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR216
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR216 genome assembly, contig: Ga0115522_149, whole

Gene Summary

Adenine Count

1243614 bp

Thymine Count

1246362 bp

Guanine Count

2445666 bp

Cytosine Count

2435852 bp

Genome Length

7371494 bp

Protein-coding Genes

6957 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
chorismate mutaseSAMN05444680_104113Not AvailablePositive2864786 - 286590140412.1
prephenate dehydrogenaseSAMN05444680_104114Not AvailablePositive2865920 - 286679831116.6
3-phosphoshikimate 1-carboxyvinyltransferaseSAMN05444680_104115Not AvailablePositive2866939 - 286893371198.6
ssu ribosomal protein s1pSAMN05444680_104116Not AvailablePositive2869093 - 287078161833.8
integration host factor subunit betaSAMN05444680_104117Not AvailablePositive2870850 - 287116711847.2
uncharacterized integral membrane proteinSAMN05444680_104118Not AvailablePositive2871236 - 287155611285.9
lipopolysaccharide biosynthesis regulator ycim, contains six tpr domains and a predicted metal-binding c-terminal domainSAMN05444680_104119Not AvailablePositive2871546 - 287273044123.1
competence protein comeaSAMN05444680_104120Not AvailablePositive2872846 - 287319312299.8
trap-type c4-dicarboxylate transport system, substrate-binding proteinSAMN05444680_104121Not AvailablePositive2873370 - 287433834771.7
trap-type mannitol/chloroaromatic compound transport system, small permease componentSAMN05444680_104122Not AvailablePositive2874342 - 287493821379.1

Displaying genes 2791 – 2800 of 7041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.