Variovorax sp. YR216

rod

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Comamonadaceae

Genus

Variovorax

Description

Variovorax sp. YR216 is a rod-shaped bacterium characterized by its single replicon structure. This trait is significant as it suggests a streamlined genetic organization, which may facilitate efficient replication and adaptability to its environment. The sequence data for this organism is available under the accession FNRO00000000.1, contributing to the understanding of its genetic makeup and potential functionalities. The rod shape of Variovorax sp. YR216 may influence its motility and ecological interactions. Rod-shaped bacteria often exhibit different behaviors in biofilm formation and nutrient acquisition compared to coccoid or filamentous forms. This morphology can affect the bacterium's ability to colonize various environments, potentially impacting its ecological role. Understanding the traits of Variovorax sp. YR216, particularly its morphology and genetic structure, provides insight into its adaptability and ecological niche. This organism may play a role in biogeochemical cycles or contribute to environmental processes due to its unique characteristics. Further research could elucidate its specific functions within microbial communities, highlighting the importance of such bacteria in environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyComamonadaceae
GenusVariovorax
SpeciesVariovorax sp. YR216
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Variovorax sp. YR216 genome assembly, contig: Ga0115522_149, whole

Gene Summary

Adenine Count

1243614 bp

Thymine Count

1246362 bp

Guanine Count

2445666 bp

Cytosine Count

2435852 bp

Genome Length

7371494 bp

Protein-coding Genes

6957 genes

Non-Coding Genes

84 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
hypothetical proteinSAMN05444680_103444Not AvailableNegative2471939 - 247241517427.7
glutamate-1-semialdehyde 2,1-aminomutaseSAMN05444680_103445Not AvailableNegative2472421 - 247370745139.5
hydroxymethylpyrimidine/phosphomethylpyrimidine kinaseSAMN05444680_103446Not AvailableNegative2473759 - 247471834344.8
twitching motility two-component system response regulator pilgSAMN05444680_103447Not AvailablePositive2475081 - 247547314431.3
twitching motility two-component system response regulator pilhSAMN05444680_103448Not AvailablePositive2475477 - 247584213539.5
twitching motility protein piliSAMN05444680_103449Not AvailablePositive2475865 - 247639818778.2
twitching motility protein piljSAMN05444680_103450Not AvailablePositive2476439 - 247877582040.8
chemosensory pili system protein chpa (sensor histidine kinase/response regulator)SAMN05444680_103451Not AvailablePositive2478792 - 2485037223576.0
deoxyribodipyrimidine photo-lyaseSAMN05444680_103452Not AvailableNegative2485155 - 248663956228.8
putative transcriptional regulatorSAMN05444680_103453Not AvailablePositive2486659 - 248723720625.6

Displaying genes 2411 – 2420 of 7041 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.