Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Betaproteobacteria
Order
Burkholderiales
Family
Comamonadaceae
Genus
Variovorax
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Betaproteobacteria |
| Order | Burkholderiales |
| Family | Comamonadaceae |
| Genus | Variovorax |
| Species | Variovorax sp. YR216 |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Not Available |
| Shape | rod |
| Mobility | Not Available |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | Not Available |
| Temperature range | Not Available |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
1243614 bp
Thymine Count
1246362 bp
Guanine Count
2445666 bp
Cytosine Count
2435852 bp
Genome Length
7371494 bp
Protein-coding Genes
6957 genes
Non-Coding Genes
84 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt ID | Strand Orientation | Gene Start/End | Protein Molecular Weight |
|---|---|---|---|---|---|
| amino acid/amide abc transporter atp-binding protein 2, haat family | SAMN05444680_102985 | Not Available | Positive | 2021709 - 2022419 | 25609.2 |
| tripartite-type tricarboxylate transporter, receptor component tctc | SAMN05444680_102986 | Not Available | Positive | 2022473 - 2023429 | 32999.2 |
| 3-isopropylmalate dehydratase, large subunit | SAMN05444680_102987 | Not Available | Positive | 2023512 - 2024786 | 45324.5 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase small subunit | SAMN05444680_102988 | Not Available | Positive | 2024845 - 2025351 | 17753.7 |
| n-methylhydantoinase b | SAMN05444680_102989 | Not Available | Positive | 2025344 - 2027047 | 60640.0 |
| n-methylhydantoinase a | SAMN05444680_102990 | Not Available | Positive | 2027044 - 2029098 | 72455.0 |
| nicotinamidase-related amidase | SAMN05444680_102991 | Not Available | Positive | 2029095 - 2029709 | 21447.7 |
| fumarate reductase flavoprotein subunit | SAMN05444680_102992 | Not Available | Positive | 2029709 - 2031118 | 48555.7 |
| 2-methylisocitrate lyase, pep mutase family | SAMN05444680_102993 | Not Available | Positive | 2031123 - 2031986 | 30981.0 |
| hypothetical protein | SAMN05444680_102994 | Not Available | Negative | 2032066 - 2032422 | 12969.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
Health Effects
No health effects information available for this bacterium.
