Prevotella ruminicola strain D31d

Gram-negativeRodNon-motileAnaerobe

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Bacteroidia

Order

Bacteroidales

Family

Prevotellaceae

Genus

Xylanibacter

Description

Prevotella ruminicola strain D31d is a Gram-negative, anaerobic bacterium characterized by its rod-shaped morphology. It is mesophilic, indicating it thrives within moderate temperature ranges typical of host-associated environments. This strain is non-motile and possesses a single replicon, with a double-membrane structure that is typical for Gram-negative bacteria. Prevotella ruminicola is primarily associated with Homo sapiens, suggesting a biotic relationship that is free-living, though it is typically found in the microbiota of the human host. The absence of sporulation indicates that this strain does not produce spores, a feature that can be significant in understanding its survival and ecological role within its habitat. The ecological insight derived from the characteristics of Prevotella ruminicola strain D31d highlights its role in the human microbiome. As an anaerobe, it likely participates in fermentation processes and contributes to the breakdown of complex carbohydrates in the gut, which is essential for nutrient absorption and overall health. Understanding the function of such microorganisms provides valuable information about human health and the dynamics of the gut microbiota. The accession number FNRF00000000.1 further facilitates the identification and study of this strain in scientific research.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassBacteroidia
OrderBacteroidales
FamilyPrevotellaceae
GenusXylanibacter
SpeciesXylanibacter ruminicola
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceNot Available
Number of membranes2
Ecology, Host, and Life Cycle
Oxygen requirementsAnaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Prevotella ruminicola strain D31d genome assembly, contig:

Gene Summary

Adenine Count

980486 bp

Thymine Count

996970 bp

Guanine Count

895359 bp

Cytosine Count

898241 bp

Genome Length

3773855 bp

Protein-coding Genes

3102 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
fkbp-type peptidyl-prolyl cis-trans isomerase fklbSAMN05216462_0074Not AvailableNegative100616 - 10157534762.8
fkbp-type peptidyl-prolyl cis-trans isomerase fklbSAMN05216462_0075Not AvailableNegative101578 - 10245631651.2
fkbp-type peptidyl-prolyl cis-trans isomerase fklbSAMN05216462_0076Not AvailableNegative102474 - 10307922029.2
nad-dependent deacetylaseSAMN05216462_0077Not AvailablePositive103227 - 10391325112.4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseSAMN05216462_0078Not AvailableNegative103950 - 10532650258.6
5-(carboxyamino)imidazole ribonucleotide mutaseSAMN05216462_0079Not AvailableNegative105354 - 10586017772.2
hypothetical proteinSAMN05216462_0080Not AvailableNegative105895 - 10651523367.9
rna polymerase, sigma 54 subunit, rpon/siglSAMN05216462_0081Not AvailableNegative106512 - 10802657337.4
hypothetical proteinSAMN05216462_0082Not AvailableNegative108044 - 10869425530.1
histidine phosphatase superfamily (branch 2)SAMN05216462_0083Not AvailablePositive108763 - 11006750500.4

Displaying genes 71 – 80 of 3102 in total

Metabolites

219 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000503L-rhamnoseC6H12O5Chemical structure of L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.0684735Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001035indole-3-pyruvateC11H8NO3Chemical structure of indole-3-pyruvate35656-49-6
Average202.1861Da
Monoisotopic202.0504181Da
BASm0001111keto-D-tagaturonateC6H9O7Chemical structure of keto-D-tagaturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0001167triphosphateO10P3Chemical structure of triphosphate14127-68-5
Average252.9153Da
Monoisotopic252.8704308Da
BASm0001639CobinamideC48H72CoN11O8Chemical structure of Cobinamide13497-85-3
Average990.0874Da
Monoisotopic989.4897335Da
BASm0001661Cu(2+)CuChemical structure of Cu(2+)7440-50-8
Average63.546Da
Monoisotopic62.929601079Da

Displaying 1–10 of 219 metabolites

Health Effects

No health effects information available for this bacterium.