Arachidicoccus rhizosphaerae strain Vu-144

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Chitinophagia

Order

Chitinophagales

Family

Chitinophagaceae

Genus

Arachidicoccus

Description

Arachidicoccus rhizosphaerae strain Vu-144 is characterized by having a single replicon, which is significant for its genomic structure and stability. The strain is cataloged under the accession number FNQY00000000.1, providing a reference point for researchers interested in its genetic makeup and phylogenetic relationships. As a member of the Arachidicoccus genus, A. rhizosphaerae is likely to play a critical role in its ecological niche, particularly in the rhizosphere, where it may interact with plant roots and other microorganisms. The presence of a single replicon suggests a streamlined genomic organization, which could be advantageous for adaptation to specific environmental conditions. The ecological insight here is that Arachidicoccus rhizosphaerae strain Vu-144 may contribute to nutrient cycling and plant health in its environment. By occupying the rhizosphere, it could facilitate beneficial interactions with plants, potentially enhancing nutrient uptake or providing protection against pathogens. Further research into its specific roles and interactions within the rhizosphere could provide valuable information for understanding microbial dynamics in soil ecosystems.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassChitinophagia
OrderChitinophagales
FamilyChitinophagaceae
GenusArachidicoccus
SpeciesArachidicoccus rhizosphaerae
Strainstrain Vu-144

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Arachidicoccus rhizosphaerae strain Vu-144 genome assembly,

Gene Summary

Adenine Count

1407141 bp

Thymine Count

1394670 bp

Guanine Count

1034612 bp

Cytosine Count

1031801 bp

Genome Length

4868714 bp

Protein-coding Genes

3836 genes

Non-Coding Genes

76 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
polygalacturonaseSAMN05192529_101344Not AvailablePositive469184 - 47068353855.2
beta-galactosidaseSAMN05192529_101345Not AvailablePositive470742 - 473477102482.0
6-phosphogluconate dehydrogenase (decarboxylating)SAMN05192529_101346Not AvailablePositive473718 - 47517252900.5
transcriptional regulator, contains xre-family hth domainSAMN05192529_101347Not AvailableNegative475264 - 47559311844.7
two component transcriptional regulator, lyttr familySAMN05192529_101348Not AvailableNegative475618 - 47634628284.3
histidine kinaseSAMN05192529_101349Not AvailableNegative476357 - 47743341256.8
cell wall-active antibiotics response 4tms yvqfSAMN05192529_101350Not AvailableNegative477443 - 47827931682.6
outer membrane protein ompaSAMN05192529_101351Not AvailableNegative478479 - 47979846501.5
hypothetical proteinSAMN05192529_101352Not AvailablePositive480263 - 4804487166.88
conserved hypothetical protein (putative transposase or invertase)SAMN05192529_101353Not AvailablePositive480634 - 48156035518.8

Displaying genes 401 – 410 of 3912 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.