Lonsdalea quercina strain ATCC 29281

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea quercina strain ATCC 29281 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain has been cataloged with the accession number FNQS00000000.1 and possesses a single replicon, indicating a streamlined genomic structure. As an aerobic organism, Lonsdalea quercina relies on oxygen for its metabolic processes, which is typical for many bacteria within its taxonomic group. The Gram-negative classification suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with the environment and resistance to certain antibiotics. Biologically, Lonsdalea quercina may play a significant role in its ecological niche, particularly in relation to plant interactions. Given the genus Lonsdalea is often associated with specific plant substrates, understanding its characteristics could provide insights into its potential roles in nutrient cycling or symbiotic relationships within ecosystems. The aerobic nature of this strain suggests it may contribute to the decomposition of organic materials in oxygen-rich environments, thus influencing soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea quercina
Strainstrain ATCC 29281

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea quercina strain ATCC 29281 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3257 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
dna-nicking endonuclease, smr domainSAMN02982996_00626Not AvailableNegative702827 - 70339321458.0
hypothetical proteinSAMN02982996_00627Not AvailableNegative704541 - 7047628291.99
bacteriophage ci repressor helix-turn-helix domain-containing proteinSAMN02982996_00628Not AvailablePositive705172 - 70603530630.7
protein of unknown functionSAMN02982996_00629Not AvailableNegative706241 - 7064327309.79
16s rrna (cytosine1407-c5)-methyltransferaseSAMN02982996_00630Not AvailableNegative706550 - 70799852579.0
gaf domain-containing proteinSAMN02982996_00631Not AvailablePositive708211 - 70875920232.1
prop effectorSAMN02982996_00632Not AvailablePositive708855 - 70957726604.5
carboxyl-terminal processing proteaseSAMN02982996_00633Not AvailablePositive709597 - 71161575786.6
ferrous iron transport protein aSAMN02982996_00634Not AvailablePositive711905 - 7121599460.69
ferrous iron transport protein aSAMN02982996_00635Not AvailablePositive712161 - 7123888212.14

Displaying genes 661 – 670 of 3359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.