Lonsdalea quercina strain ATCC 29281

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea quercina strain ATCC 29281 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain has been cataloged with the accession number FNQS00000000.1 and possesses a single replicon, indicating a streamlined genomic structure. As an aerobic organism, Lonsdalea quercina relies on oxygen for its metabolic processes, which is typical for many bacteria within its taxonomic group. The Gram-negative classification suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with the environment and resistance to certain antibiotics. Biologically, Lonsdalea quercina may play a significant role in its ecological niche, particularly in relation to plant interactions. Given the genus Lonsdalea is often associated with specific plant substrates, understanding its characteristics could provide insights into its potential roles in nutrient cycling or symbiotic relationships within ecosystems. The aerobic nature of this strain suggests it may contribute to the decomposition of organic materials in oxygen-rich environments, thus influencing soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea quercina
Strainstrain ATCC 29281

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea quercina strain ATCC 29281 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3257 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
toxic protein symeSAMN02982996_03385Not AvailableNegative3749332 - 37494875836.11
rhs repeat-associated core domain-containing proteinSAMN02982996_03386Not AvailablePositive3749878 - 375118648517.3
smi1 / knr4 family (sukh-1)SAMN02982996_03387Not AvailablePositive3751190 - 375172020024.2
hypothetical proteinSAMN02982996_03388Not AvailablePositive3751969 - 375225310939.6
yd repeat-containing proteinSAMN02982996_03389Not AvailablePositive3752272 - 375264313914.2
yd repeat-containing proteinSAMN02982996_03390Not AvailablePositive3752680 - 375298211816.5
hypothetical proteinSAMN02982996_03391Not AvailablePositive3753836 - 375415311689.5
putative transposaseSAMN02982996_03392Not AvailableNegative3754150 - 375513037998.9
transposaseSAMN02982996_03393Not AvailableNegative3755157 - 375563917905.4
type vi secretion system secreted protein vgrgSAMN02982996_03394Not AvailablePositive3755703 - 375642825662.6

Displaying genes 3331 – 3340 of 3359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.