Lonsdalea quercina strain ATCC 29281

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea quercina strain ATCC 29281 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain has been cataloged with the accession number FNQS00000000.1 and possesses a single replicon, indicating a streamlined genomic structure. As an aerobic organism, Lonsdalea quercina relies on oxygen for its metabolic processes, which is typical for many bacteria within its taxonomic group. The Gram-negative classification suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with the environment and resistance to certain antibiotics. Biologically, Lonsdalea quercina may play a significant role in its ecological niche, particularly in relation to plant interactions. Given the genus Lonsdalea is often associated with specific plant substrates, understanding its characteristics could provide insights into its potential roles in nutrient cycling or symbiotic relationships within ecosystems. The aerobic nature of this strain suggests it may contribute to the decomposition of organic materials in oxygen-rich environments, thus influencing soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea quercina
Strainstrain ATCC 29281

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea quercina strain ATCC 29281 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3257 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
sigma e regulatory protein, mucb/rsebSAMN02982996_02532Not AvailableNegative2850185 - 285113535218.2
sigma-e factor negative regulatory protein rseaSAMN02982996_02533Not AvailableNegative2851135 - 285179124068.2
rna polymerase, sigma-24 subunit, rpoeSAMN02982996_02534Not AvailableNegative2851843 - 285241821781.0
trna1val (adenine37-n6)-methyltransferaseSAMN02982996_02535Not AvailableNegative2852691 - 285343427040.4
atp-dependent rna helicase srmbSAMN02982996_02536Not AvailablePositive2853567 - 285489849886.2
autonomous glycyl radical cofactorSAMN02982996_02537Not AvailableNegative2855063 - 285544614515.1
uracil-dna glycosylaseSAMN02982996_02538Not AvailablePositive2855802 - 285648825787.7
Trna-alaNot AvailableNot AvailablePositive2856603 - 2856678Not Available
Trna-alaNot AvailableNot AvailablePositive2856719 - 2856794Not Available
glutamyl-trna synthetaseSAMN02982996_02541Not AvailableNegative2857111 - 285852653334.0

Displaying genes 2531 – 2540 of 3359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.