Lonsdalea quercina strain ATCC 29281

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea quercina strain ATCC 29281 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain has been cataloged with the accession number FNQS00000000.1 and possesses a single replicon, indicating a streamlined genomic structure. As an aerobic organism, Lonsdalea quercina relies on oxygen for its metabolic processes, which is typical for many bacteria within its taxonomic group. The Gram-negative classification suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with the environment and resistance to certain antibiotics. Biologically, Lonsdalea quercina may play a significant role in its ecological niche, particularly in relation to plant interactions. Given the genus Lonsdalea is often associated with specific plant substrates, understanding its characteristics could provide insights into its potential roles in nutrient cycling or symbiotic relationships within ecosystems. The aerobic nature of this strain suggests it may contribute to the decomposition of organic materials in oxygen-rich environments, thus influencing soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea quercina
Strainstrain ATCC 29281

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea quercina strain ATCC 29281 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3257 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
eal domain, c-di-gmp-specific phosphodiesterase class i (or its enzymatically inactive variant)SAMN02982996_02521Not AvailableNegative2839445 - 284022129620.2
peptidoglycan/lps o-acetylase oafa/yrhl, contains acyltransferase and sgnh-hydrolase domainsSAMN02982996_02522Not AvailablePositive2841447 - 284251740731.6
4fe-4s dicluster domain-containing proteinSAMN02982996_02523Not AvailablePositive2843052 - 28433129896.81
holo-[acyl-carrier-protein] synthaseSAMN02982996_02524Not AvailableNegative2843320 - 284370014002.9
pyridoxine 5-phosphate synthaseSAMN02982996_02525Not AvailableNegative2843700 - 284443126411.8
dna replication and repair protein recoSAMN02982996_02526Not AvailableNegative2844506 - 284523727316.1
gtp-binding protein eraSAMN02982996_02527Not AvailableNegative2845249 - 284615434344.6
rnase iiiSAMN02982996_02528Not AvailableNegative2846151 - 284683125619.8
signal peptidase iSAMN02982996_02530Not AvailableNegative2847010 - 284797835477.4
gtp-binding protein lepaSAMN02982996_02531Not AvailableNegative2847995 - 284979466323.0

Displaying genes 2521 – 2530 of 3359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.