Lonsdalea quercina strain ATCC 29281

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Pectobacteriaceae

Genus

Lonsdalea

Description

Lonsdalea quercina strain ATCC 29281 is a Gram-negative, aerobic bacterium characterized by its rod-shaped morphology. This strain has been cataloged with the accession number FNQS00000000.1 and possesses a single replicon, indicating a streamlined genomic structure. As an aerobic organism, Lonsdalea quercina relies on oxygen for its metabolic processes, which is typical for many bacteria within its taxonomic group. The Gram-negative classification suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, a trait that can influence its interactions with the environment and resistance to certain antibiotics. Biologically, Lonsdalea quercina may play a significant role in its ecological niche, particularly in relation to plant interactions. Given the genus Lonsdalea is often associated with specific plant substrates, understanding its characteristics could provide insights into its potential roles in nutrient cycling or symbiotic relationships within ecosystems. The aerobic nature of this strain suggests it may contribute to the decomposition of organic materials in oxygen-rich environments, thus influencing soil health and fertility.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyPectobacteriaceae
GenusLonsdalea
SpeciesLonsdalea quercina
Strainstrain ATCC 29281

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Lonsdalea quercina strain ATCC 29281 genome assembly, contig:

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3257 genes

Non-Coding Genes

102 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
alpha,alpha-trehalaseSAMN02982996_01736Not AvailablePositive1979714 - 198132161875.3
atp-dependent clp protease atp-binding subunit clpaSAMN02982996_01737Not AvailableNegative1981428 - 198370183909.5
atp-dependent clp protease adaptor protein clpsSAMN02982996_01738Not AvailableNegative1983731 - 198405112124.2
cold shock protein (beta-ribbon, cspa family)SAMN02982996_01739Not AvailablePositive1984376 - 19845977930.38
hypothetical proteinSAMN02982996_01740Not AvailableNegative1984756 - 198554729321.0
uncharacterized membrane protein ybje, duf340 familySAMN02982996_01741Not AvailablePositive1986323 - 198722532081.8
n-acetylmuramoyl-l-alanine amidaseSAMN02982996_01742Not AvailableNegative1987238 - 198808031264.3
uncharacterized conserved protein ybjq, upf0145 familySAMN02982996_01743Not AvailableNegative1988094 - 198841711506.8
arginine transport system atp-binding proteinSAMN02982996_01744Not AvailablePositive1988758 - 198950727711.4
arginine transport system substrate-binding proteinSAMN02982996_01745Not AvailablePositive1989525 - 199025626889.8

Displaying genes 1751 – 1760 of 3359 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.