Thiothrix caldifontis strain DSM 21228

rodaerobic

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Thiotrichales

Family

Thiotrichaceae

Genus

Thiothrix

Description

Thiothrix caldifontis strain DSM 21228 is a Gram-negative, non-motile bacterium characterized by its rod shape and aerobic metabolism. This strain is classified as mesophilic, with an optimal growth temperature of 25°C. It possesses a single replicon, which indicates a streamlined genetic organization. The aerobic nature of Thiothrix caldifontis suggests that it relies on oxygen for its metabolic processes, which can influence its ecological role in various environments. As a mesophilic organism, it thrives within moderate temperature ranges, making it suitable for habitats that experience such conditions. Understanding the traits of Thiothrix caldifontis, including its Gram-negative status and non-motility, can provide insights into its ecological interactions and potential applications. Its aerobic metabolism might suggest a role in biogeochemical cycles, particularly in environments where sulfur compounds are present, as many members of the Thiothrix genus are known to participate in sulfur oxidation processes. Overall, the characteristics of Thiothrix caldifontis strain DSM 21228 highlight its potential significance in ecological systems where mesophilic, aerobic, and sulfur-related processes are critical. The strain's unique traits may also warrant further exploration for biotechnological applications, especially in the context of environmental microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderThiotrichales
FamilyThiotrichaceae
GenusThiothrix
SpeciesThiothrix caldifontis
Strainstrain DSM 21228

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsaerobic
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Thiothrix caldifontis strain DSM 21228 genome assembly, contig:

Gene Summary

Adenine Count

975519 bp

Thymine Count

966984 bp

Guanine Count

988017 bp

Cytosine Count

1001078 bp

Genome Length

3936903 bp

Protein-coding Genes

3767 genes

Non-Coding Genes

46 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
k(+)-stimulated pyrophosphate-energized sodium pumpSAMN05660964_00008Not AvailablePositive7027 - 904868720.5
16s rrna (cytidine1402-2'-o)-methyltransferaseSAMN05660964_00009Not AvailablePositive9126 - 996830143.5
hypothetical proteinSAMN05660964_00010Not AvailableNegative9965 - 1057622886.0
inorganic pyrophosphataseSAMN05660964_00011Not AvailablePositive10680 - 1123420574.7
penicillin-binding protein 2SAMN05660964_00012Not AvailablePositive11290 - 1329674162.0
rod shape determining protein rodaSAMN05660964_00013Not AvailablePositive13289 - 1440140912.4
membrane-bound lytic murein transglycosylase bSAMN05660964_00014Not AvailablePositive14414 - 1563744538.0
rare lipoprotein aSAMN05660964_00015Not AvailablePositive15770 - 1655227977.0
d-alanyl-d-alanine carboxypeptidase (penicillin-binding protein 5/6)SAMN05660964_00016Not AvailablePositive16623 - 1786445666.2
hypothetical proteinSAMN05660964_00017Not AvailablePositive17889 - 1817010822.0

Displaying genes 11 – 20 of 3813 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.