Rubrimonas cliftonensis strain DSM 15345

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Rubrimonas

Description

Rubrimonas cliftonensis strain DSM 15345 is a bacterial strain characterized by a single replicon, indicating a streamlined genomic structure. The genome of this strain is cataloged under the accession number FNQM00000000.1, which provides a reference point for researchers looking to study its genetic makeup and functionality. This strain belongs to the genus Rubrimonas, which is known for its environmental relevance. While specific ecological roles or metabolic capabilities of R. cliftonensis are not detailed in the provided traits, members of the Rubrimonas genus are typically associated with diverse habitats, including soil and aquatic environments, where they may play significant roles in nutrient cycling and ecological interactions. The presence of a single replicon suggests a certain level of genomic efficiency, which can be advantageous in various ecological contexts. Such efficiency might allow R. cliftonensis to quickly adapt to environmental changes or compete effectively for resources in its habitat. In summary, Rubrimonas cliftonensis strain DSM 15345, with its single replicon and documented genome accession, represents a potentially important organism in microbial ecology, highlighting the need for further exploration of its biological and ecological contributions. Understanding its role within its ecosystem could provide insights into microbial diversity and functionality in environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusRubrimonas
SpeciesRubrimonas cliftonensis
Strainstrain DSM 15345

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrimonas cliftonensis strain DSM 15345 genome assembly, contig:

Gene Summary

Adenine Count

691386 bp

Thymine Count

692190 bp

Guanine Count

1740287 bp

Cytosine Count

1740205 bp

Genome Length

4864068 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-alanyl-d-alanine carboxypeptidaseSAMN05444370_10277Not AvailablePositive670227 - 67112932319.7
regulator of rnase e activity rraaSAMN05444370_10278Not AvailableNegative671153 - 67184823337.0
acetyl esterase/lipaseSAMN05444370_10279Not AvailableNegative671845 - 67275331728.4
glutathione synthaseSAMN05444370_10280Not AvailableNegative672770 - 67371134635.7
osmotically-inducible protein osmy, contains bon domainSAMN05444370_10281Not AvailableNegative673722 - 67448026856.2
putative endonucleaseSAMN05444370_10282Not AvailableNegative674474 - 67485713741.2
16s rrna (cytidine1402-2'-o)-methyltransferaseSAMN05444370_10283Not AvailableNegative674850 - 67581533400.8
utp--glnb (protein pii) uridylyltransferase, glndSAMN05444370_10284Not AvailablePositive677084 - 679930104123.0
putative peptidoglycan lipid ii flippaseSAMN05444370_10285Not AvailablePositive679941 - 68151554263.6
rhomboid family proteinSAMN05444370_10286Not AvailableNegative681524 - 68217423415.0

Displaying genes 661 – 670 of 4640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.