Rubrimonas cliftonensis strain DSM 15345

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Rubrimonas

Description

Rubrimonas cliftonensis strain DSM 15345 is a bacterial strain characterized by a single replicon, indicating a streamlined genomic structure. The genome of this strain is cataloged under the accession number FNQM00000000.1, which provides a reference point for researchers looking to study its genetic makeup and functionality. This strain belongs to the genus Rubrimonas, which is known for its environmental relevance. While specific ecological roles or metabolic capabilities of R. cliftonensis are not detailed in the provided traits, members of the Rubrimonas genus are typically associated with diverse habitats, including soil and aquatic environments, where they may play significant roles in nutrient cycling and ecological interactions. The presence of a single replicon suggests a certain level of genomic efficiency, which can be advantageous in various ecological contexts. Such efficiency might allow R. cliftonensis to quickly adapt to environmental changes or compete effectively for resources in its habitat. In summary, Rubrimonas cliftonensis strain DSM 15345, with its single replicon and documented genome accession, represents a potentially important organism in microbial ecology, highlighting the need for further exploration of its biological and ecological contributions. Understanding its role within its ecosystem could provide insights into microbial diversity and functionality in environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusRubrimonas
SpeciesRubrimonas cliftonensis
Strainstrain DSM 15345

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrimonas cliftonensis strain DSM 15345 genome assembly, contig:

Gene Summary

Adenine Count

691386 bp

Thymine Count

692190 bp

Guanine Count

1740287 bp

Cytosine Count

1740205 bp

Genome Length

4864068 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized conserved protein, duf1499 familySAMN05444370_101442Not AvailableNegative470987 - 47145416215.4
4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthaseSAMN05444370_101443Not AvailableNegative471451 - 47269844436.3
protein rodz, contains xre-like hth and duf4115 domainsSAMN05444370_101444Not AvailableNegative472719 - 47395442014.9
transcriptional regulator, marr familySAMN05444370_101445Not AvailableNegative474128 - 47467320037.1
3-hydroxyisobutyrate dehydrogenaseSAMN05444370_101446Not AvailableNegative474752 - 47565429727.8
antitoxin cptbSAMN05444370_101447Not AvailableNegative475665 - 4759289848.68
fructokinaseSAMN05444370_101448Not AvailableNegative475940 - 47684530352.1
catalase-peroxidaseSAMN05444370_101449Not AvailableNegative477018 - 47920779786.8
transcriptional regulator, lysr familySAMN05444370_101450Not AvailableNegative479376 - 48030232144.6
mfs transporter, dha1 family, bicyclomycin/chloramphenicol resistance proteinSAMN05444370_101451Not AvailablePositive480392 - 48169044005.0

Displaying genes 471 – 480 of 4640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.