Rubrimonas cliftonensis strain DSM 15345

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Rubrimonas

Description

Rubrimonas cliftonensis strain DSM 15345 is a bacterial strain characterized by a single replicon, indicating a streamlined genomic structure. The genome of this strain is cataloged under the accession number FNQM00000000.1, which provides a reference point for researchers looking to study its genetic makeup and functionality. This strain belongs to the genus Rubrimonas, which is known for its environmental relevance. While specific ecological roles or metabolic capabilities of R. cliftonensis are not detailed in the provided traits, members of the Rubrimonas genus are typically associated with diverse habitats, including soil and aquatic environments, where they may play significant roles in nutrient cycling and ecological interactions. The presence of a single replicon suggests a certain level of genomic efficiency, which can be advantageous in various ecological contexts. Such efficiency might allow R. cliftonensis to quickly adapt to environmental changes or compete effectively for resources in its habitat. In summary, Rubrimonas cliftonensis strain DSM 15345, with its single replicon and documented genome accession, represents a potentially important organism in microbial ecology, highlighting the need for further exploration of its biological and ecological contributions. Understanding its role within its ecosystem could provide insights into microbial diversity and functionality in environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusRubrimonas
SpeciesRubrimonas cliftonensis
Strainstrain DSM 15345

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrimonas cliftonensis strain DSM 15345 genome assembly, contig:

Gene Summary

Adenine Count

691386 bp

Thymine Count

692190 bp

Guanine Count

1740287 bp

Cytosine Count

1740205 bp

Genome Length

4864068 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
diguanylate cyclase/phosphodiesteraseSAMN05444370_11915Not AvailableNegative4006606 - 400799749085.9
ompa family proteinSAMN05444370_11916Not AvailablePositive4008342 - 401003355628.5
hypothetical proteinSAMN05444370_11917Not AvailablePositive4010030 - 401043113382.1
uncharacterized conserved protein, duf2147 familySAMN05444370_11918Not AvailableNegative4010454 - 401090315096.8
phenylalanyl-trna synthetase, alpha subunitSAMN05444370_11919Not AvailablePositive4011007 - 401211040718.6
signal transduction histidine kinaseSAMN05444370_11920Not AvailableNegative4012160 - 401334443654.9
signal transduction histidine kinaseSAMN05444370_11921Not AvailableNegative4013464 - 401598688362.6
trap transporter, dctm subunitSAMN05444370_11922Not AvailableNegative4016347 - 401770248267.5
trap-type mannitol/chloroaromatic compound transport system, small permease componentSAMN05444370_11923Not AvailableNegative4017706 - 401890544191.2
trap-type mannitol/chloroaromatic compound transport system, substrate-binding proteinSAMN05444370_11924Not AvailableNegative4019016 - 402011339821.4

Displaying genes 3771 – 3780 of 4640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.