Rubrimonas cliftonensis strain DSM 15345

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Paracoccaceae

Genus

Rubrimonas

Description

Rubrimonas cliftonensis strain DSM 15345 is a bacterial strain characterized by a single replicon, indicating a streamlined genomic structure. The genome of this strain is cataloged under the accession number FNQM00000000.1, which provides a reference point for researchers looking to study its genetic makeup and functionality. This strain belongs to the genus Rubrimonas, which is known for its environmental relevance. While specific ecological roles or metabolic capabilities of R. cliftonensis are not detailed in the provided traits, members of the Rubrimonas genus are typically associated with diverse habitats, including soil and aquatic environments, where they may play significant roles in nutrient cycling and ecological interactions. The presence of a single replicon suggests a certain level of genomic efficiency, which can be advantageous in various ecological contexts. Such efficiency might allow R. cliftonensis to quickly adapt to environmental changes or compete effectively for resources in its habitat. In summary, Rubrimonas cliftonensis strain DSM 15345, with its single replicon and documented genome accession, represents a potentially important organism in microbial ecology, highlighting the need for further exploration of its biological and ecological contributions. Understanding its role within its ecosystem could provide insights into microbial diversity and functionality in environmental contexts.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyParacoccaceae
GenusRubrimonas
SpeciesRubrimonas cliftonensis
Strainstrain DSM 15345

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rubrimonas cliftonensis strain DSM 15345 genome assembly, contig:

Gene Summary

Adenine Count

691386 bp

Thymine Count

692190 bp

Guanine Count

1740287 bp

Cytosine Count

1740205 bp

Genome Length

4864068 bp

Protein-coding Genes

4570 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
phage integrase family proteinSAMN05444370_11464Not AvailableNegative3697750 - 369883540391.7
hypothetical proteinSAMN05444370_11465Not AvailableNegative3698816 - 36990227322.81
methyltransferase small domain-containing proteinSAMN05444370_11466Not AvailablePositive3699466 - 370083946379.4
hypothetical proteinSAMN05444370_11467Not AvailablePositive3701055 - 37013038500.84
hypothetical proteinSAMN05444370_11468Not AvailablePositive3701436 - 370172911272.2
transposase dde domain-containing proteinSAMN05444370_11469Not AvailablePositive3701798 - 37020228300.15
hypothetical proteinSAMN05444370_11470Not AvailableNegative3702513 - 37027588785.28
phage integrase family proteinSAMN05444370_11471Not AvailablePositive3702904 - 370361426236.5
3',5'-cyclic amp phosphodiesterase cpdaSAMN05444370_11472Not AvailableNegative3703868 - 370468028902.0
carbohydrate abc transporter substrate-binding protein, cut1 familySAMN05444370_11473Not AvailableNegative3704748 - 370606147918.7

Displaying genes 3471 – 3480 of 4640 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.