Tindallia californiensis strain APO

anaerobic

Kingdom

Bacillati

Phylum

Bacillota

Class

Clostridia

Order

Peptostreptococcales

Family

Tindalliaceae

Genus

Tindallia

Description

Tindallia californiensis strain APO is an anaerobic bacterium, meaning it thrives in environments devoid of oxygen. This characteristic is significant as it indicates the strain's adaptation to specific ecological niches where oxygen is limited or absent, such as deep-sea sediments or certain types of wetlands. The strain has a single replicon, which suggests a streamlined genetic organization, potentially enhancing its efficiency in nutrient utilization and metabolic processes in its anaerobic habitat. The genomic data for Tindallia californiensis strain APO is cataloged under the accession number FNPV00000000.1, providing a reference point for researchers interested in studying this organism further. Understanding its genetic makeup may yield insights into its metabolic pathways and ecological role. The anaerobic nature of Tindallia californiensis strain APO may also have implications for biogeochemical cycles in its environment. Anaerobic bacteria are often involved in processes such as fermentation, denitrification, and methanogenesis, contributing to nutrient cycling and energy flow within ecosystems. The presence of Tindallia californiensis strain APO in an anaerobic ecosystem could therefore play a crucial role in maintaining ecological balance and supporting the diversity of microbial life in its habitat. Overall, the characteristics of this strain highlight its specialized adaptations and potential ecological significance.

Taxonomy

KingdomBacillati
PhylumBacillota
ClassClostridia
OrderPeptostreptococcales
FamilyTindalliaceae
GenusTindallia
SpeciesTindallia californiensis
Strainstrain APO

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsanaerobic
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Tindallia californiensis strain APO genome assembly, contig:

Gene Summary

Adenine Count

903415 bp

Thymine Count

970530 bp

Guanine Count

576919 bp

Cytosine Count

662820 bp

Genome Length

3122071 bp

Protein-coding Genes

2784 genes

Non-Coding Genes

107 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
uncharacterized conserved protein ybbk, duf523 familySAMN05192546_10193Not AvailableNegative89960 - 9090436213.7
hypothetical proteinSAMN05192546_10194Not AvailableNegative91020 - 9141814724.2
gas vesicle proteinSAMN05192546_10195Not AvailableNegative91462 - 9195618730.3
glutamine synthetaseSAMN05192546_10196Not AvailableNegative92049 - 9398074015.9
transporter associated domain-containing proteinSAMN05192546_10197Not AvailableNegative94124 - 9482525770.7
sigma-b regulation protein rsbu (phosphoserine phosphatase)SAMN05192546_10198Not AvailableNegative94999 - 9621947175.0
metallo-beta-lactamase family proteinSAMN05192546_10199Not AvailablePositive96379 - 9801061771.7
5-methyltetrahydrofolate--homocysteine methyltransferaseSAMN05192546_101100Not AvailableNegative98007 - 10041886336.4
trk system potassium uptake protein trkhSAMN05192546_101101Not AvailableNegative100502 - 10195052601.5
trk system potassium uptake protein trkaSAMN05192546_101102Not AvailableNegative101916 - 10330751806.3

Displaying genes 181 – 190 of 2891 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.