Halopenitus persicus strain DC30

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halopenitus

Description

Halopenitus persicus strain DC30 is characterized by a single replicon, which may indicate a streamlined genomic organization. This strain is cataloged under the accession number FNPC00000000.1, providing a reference for genetic and genomic studies. The presence of one replicon suggests that Halopenitus persicus may possess a simplified genetic architecture compared to other organisms with multiple replicons. This can have implications for its adaptability and evolutionary strategies, potentially allowing for more efficient replication and maintenance of genetic integrity in its environment. Furthermore, the strain's specific ecological role is not detailed in the available data; however, strains with similar genomic configurations often occupy specialized niches, which may influence their interactions within microbial communities. Understanding the genomic traits of Halopenitus persicus strain DC30 can contribute to insights into its ecological functions and relationships with other microorganisms. Overall, the single-replicon structure of Halopenitus persicus strain DC30 may reflect adaptations that enable survival in specific environmental conditions, highlighting the importance of genomic studies in elucidating the ecological roles of microbial strains.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalopenitus
SpeciesHalopenitus persicus
Strainstrain DC30

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halopenitus persicus strain DC30,IBRC 10041,KCTC 4046 genome

Gene Summary

Adenine Count

588401 bp

Thymine Count

593479 bp

Guanine Count

1120980 bp

Cytosine Count

1121516 bp

Genome Length

3424491 bp

Protein-coding Genes

3349 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
spermidine/putrescine transport system permease proteinSAMN05216564_102143Not AvailablePositive764591 - 76542129911.2
spermidine/putrescine transport system substrate-binding proteinSAMN05216564_102144Not AvailablePositive765535 - 76674043808.6
putative spermidine/putrescine transport system atp-binding protein/spermidine/putrescine transport system atp-binding proteinSAMN05216564_102145Not AvailablePositive766744 - 76787741376.7
aldehyde dehydrogenase (nad+)SAMN05216564_102146Not AvailablePositive767956 - 76945853263.5
hsp20 family proteinSAMN05216564_102147Not AvailableNegative769687 - 77014517055.3
prephenate dehydrataseSAMN05216564_102148Not AvailableNegative770257 - 77107829546.2
predicted nuclease of the rnase h fold, hicb familySAMN05216564_102149Not AvailablePositive771199 - 7714027383.18
hypothetical proteinSAMN05216564_102150Not AvailableNegative771422 - 7716438183.81
leucyl-trna synthetaseSAMN05216564_102151Not AvailableNegative771707 - 774511104441.0
predicted membrane proteinSAMN05216564_102152Not AvailablePositive774697 - 77516116318.0

Displaying genes 771 – 780 of 3406 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.