Halopenitus persicus strain DC30

Kingdom

Methanobacteriati

Phylum

Methanobacteriota

Class

Halobacteria

Order

Halobacteriales

Family

Haloferacaceae

Genus

Halopenitus

Description

Halopenitus persicus strain DC30 is characterized by a single replicon, which may indicate a streamlined genomic organization. This strain is cataloged under the accession number FNPC00000000.1, providing a reference for genetic and genomic studies. The presence of one replicon suggests that Halopenitus persicus may possess a simplified genetic architecture compared to other organisms with multiple replicons. This can have implications for its adaptability and evolutionary strategies, potentially allowing for more efficient replication and maintenance of genetic integrity in its environment. Furthermore, the strain's specific ecological role is not detailed in the available data; however, strains with similar genomic configurations often occupy specialized niches, which may influence their interactions within microbial communities. Understanding the genomic traits of Halopenitus persicus strain DC30 can contribute to insights into its ecological functions and relationships with other microorganisms. Overall, the single-replicon structure of Halopenitus persicus strain DC30 may reflect adaptations that enable survival in specific environmental conditions, highlighting the importance of genomic studies in elucidating the ecological roles of microbial strains.

Taxonomy

KingdomMethanobacteriati
PhylumMethanobacteriota
ClassHalobacteria
OrderHalobacteriales
FamilyHaloferacaceae
GenusHalopenitus
SpeciesHalopenitus persicus
Strainstrain DC30

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Halopenitus persicus strain DC30,IBRC 10041,KCTC 4046 genome

Gene Summary

Adenine Count

588401 bp

Thymine Count

593479 bp

Guanine Count

1120980 bp

Cytosine Count

1121516 bp

Genome Length

3424491 bp

Protein-coding Genes

3349 genes

Non-Coding Genes

57 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
proteasome lid subunit rpn8/rpn11, contains jab1/mpn metalloenzyme (jamm) motifSAMN05216564_10139Not AvailablePositive36677 - 3716217481.8
rhodanese-related sulfurtransferaseSAMN05216564_10140Not AvailablePositive37186 - 3750611684.4
nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase familySAMN05216564_10141Not AvailablePositive37617 - 3832124904.0
hypothetical proteinSAMN05216564_10142Not AvailableNegative38364 - 3884617028.5
electron-transferring-flavoprotein dehydrogenaseSAMN05216564_10143Not AvailablePositive39029 - 4042050932.7
lsu ribosomal protein l12aeSAMN05216564_10144Not AvailableNegative40586 - 4092111362.3
16s ribosomal rna . archaeal ssuNot AvailableNot AvailablePositive41690 - 4231318.01
lsu ribosomal protein l10pSAMN05216564_10145Not AvailableNegative40940 - 4198336401.5
lsu ribosomal protein l1pSAMN05216564_10146Not AvailableNegative41980 - 4261823255.1
hypothetical proteinSAMN05216564_10147Not AvailablePositive42845 - 4329415640.5

Displaying genes 41 – 50 of 3406 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.