Collimonas sp. OK242

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK242 is a bacterial strain characterized by having a single replicon, which indicates a simpler genomic structure compared to some other bacterial species that may possess multiple replicons. The strain is cataloged under the accession number FNOR00000000.1, which provides a reference point for researchers interested in accessing its genomic data. As a member of the genus Collimonas, this strain is likely involved in saprophytic processes, which involve the decomposition of organic matter. Members of the Collimonas genus are known for their ability to thrive in soil environments, often engaging in interactions with fungi and playing a role in nutrient cycling. The simplicity of having one replicon may confer advantages in terms of replication efficiency and stability under certain environmental conditions. This trait may allow Collimonas sp. OK242 to adapt rapidly to changes in its habitat, facilitating its ecological role in the breakdown of organic materials. In summary, Collimonas sp. OK242, with its single replicon, is positioned within a broader ecological context as a decomposer in soil ecosystems. Its characteristics potentially contribute to the maintenance of soil health and fertility by participating in nutrient cycling and organic matter decomposition. Further studies on this strain could enhance our understanding of its specific interactions within the soil microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK242
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK242 genome assembly, contig: Ga0070537_156, whole

Gene Summary

Adenine Count

1072391 bp

Thymine Count

1065792 bp

Guanine Count

1409540 bp

Cytosine Count

1429377 bp

Genome Length

4978279 bp

Protein-coding Genes

4609 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
putative multiple sugar transport system atp-binding proteinSAMN04515617_103202Not AvailableNegative944081 - 94561956462.4
putative multiple sugar transport system substrate-binding proteinSAMN04515617_103203Not AvailableNegative945750 - 94681438239.2
dna-binding transcriptional regulator, lysr familySAMN04515617_103204Not AvailableNegative947246 - 94813632340.1
conserved hypothetical integral membrane proteinSAMN04515617_103205Not AvailablePositive948335 - 94944738528.2
methyl-accepting chemotaxis sensory transducer with cache sensorSAMN04515617_103206Not AvailablePositive949830 - 95182469554.2
ribose-5-phosphate isomeraseSAMN04515617_103207Not AvailableNegative951911 - 95259124138.6
monovalent cation:h+ antiporter-2, cpa2 familySAMN04515617_103208Not AvailableNegative952677 - 95444363475.4
peptide deformylaseSAMN04515617_103209Not AvailableNegative954643 - 95517919961.8
utp--glucose-1-phosphate uridylyltransferaseSAMN04515617_103210Not AvailableNegative955199 - 95607431809.7
dna ligase (nad+)SAMN04515617_103211Not AvailableNegative956061 - 95814275456.1

Displaying genes 851 – 860 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.