Collimonas sp. OK242

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK242 is a bacterial strain characterized by having a single replicon, which indicates a simpler genomic structure compared to some other bacterial species that may possess multiple replicons. The strain is cataloged under the accession number FNOR00000000.1, which provides a reference point for researchers interested in accessing its genomic data. As a member of the genus Collimonas, this strain is likely involved in saprophytic processes, which involve the decomposition of organic matter. Members of the Collimonas genus are known for their ability to thrive in soil environments, often engaging in interactions with fungi and playing a role in nutrient cycling. The simplicity of having one replicon may confer advantages in terms of replication efficiency and stability under certain environmental conditions. This trait may allow Collimonas sp. OK242 to adapt rapidly to changes in its habitat, facilitating its ecological role in the breakdown of organic materials. In summary, Collimonas sp. OK242, with its single replicon, is positioned within a broader ecological context as a decomposer in soil ecosystems. Its characteristics potentially contribute to the maintenance of soil health and fertility by participating in nutrient cycling and organic matter decomposition. Further studies on this strain could enhance our understanding of its specific interactions within the soil microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK242
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK242 genome assembly, contig: Ga0070537_156, whole

Gene Summary

Adenine Count

1072391 bp

Thymine Count

1065792 bp

Guanine Count

1409540 bp

Cytosine Count

1429377 bp

Genome Length

4978279 bp

Protein-coding Genes

4609 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
d-xylose transport system substrate-binding proteinSAMN04515617_111164Not AvailableNegative3030100 - 303111636133.5
xylose isomeraseSAMN04515617_111165Not AvailableNegative3031212 - 303252848670.3
laci family transcriptional regulatorSAMN04515617_111166Not AvailablePositive3032799 - 303401345120.2
aldose 1-epimeraseSAMN04515617_111167Not AvailablePositive3034038 - 303510538545.8
phospholipase cSAMN04515617_111168Not AvailableNegative3035279 - 303746280698.5
ammonium transporter, amt familySAMN04515617_111169Not AvailablePositive3037938 - 303917644544.6
calcineurin-like phosphoesteraseSAMN04515617_111170Not AvailablePositive3039453 - 304016926809.7
branched-chain amino acid transport proteinSAMN04515617_111171Not AvailableNegative3040191 - 304051711758.2
4-azaleucine resistance probable transporter azlcSAMN04515617_111172Not AvailableNegative3040514 - 304123926005.3
aspartate racemaseSAMN04515617_111173Not AvailablePositive3041514 - 304221225374.6

Displaying genes 2851 – 2860 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.