Collimonas sp. OK242

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Betaproteobacteria

Order

Burkholderiales

Family

Oxalobacteraceae

Genus

Collimonas

Description

Collimonas sp. OK242 is a bacterial strain characterized by having a single replicon, which indicates a simpler genomic structure compared to some other bacterial species that may possess multiple replicons. The strain is cataloged under the accession number FNOR00000000.1, which provides a reference point for researchers interested in accessing its genomic data. As a member of the genus Collimonas, this strain is likely involved in saprophytic processes, which involve the decomposition of organic matter. Members of the Collimonas genus are known for their ability to thrive in soil environments, often engaging in interactions with fungi and playing a role in nutrient cycling. The simplicity of having one replicon may confer advantages in terms of replication efficiency and stability under certain environmental conditions. This trait may allow Collimonas sp. OK242 to adapt rapidly to changes in its habitat, facilitating its ecological role in the breakdown of organic materials. In summary, Collimonas sp. OK242, with its single replicon, is positioned within a broader ecological context as a decomposer in soil ecosystems. Its characteristics potentially contribute to the maintenance of soil health and fertility by participating in nutrient cycling and organic matter decomposition. Further studies on this strain could enhance our understanding of its specific interactions within the soil microbiome.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassBetaproteobacteria
OrderBurkholderiales
FamilyOxalobacteraceae
GenusCollimonas
SpeciesCollimonas sp. OK242
StrainNo strain

Profile

Physiology
Gram staining propertiesNot Available
ShapeNot Available
MobilityNot Available
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperatureNot Available
Temperature rangeNot Available
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Collimonas sp. OK242 genome assembly, contig: Ga0070537_156, whole

Gene Summary

Adenine Count

1072391 bp

Thymine Count

1065792 bp

Guanine Count

1409540 bp

Cytosine Count

1429377 bp

Genome Length

4978279 bp

Protein-coding Genes

4609 genes

Non-Coding Genes

58 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProt IDStrand OrientationGene Start/EndProtein Molecular Weight
protocatechuate 3,4-dioxygenase alpha subunitSAMN04515617_111144Not AvailablePositive3013704 - 301422218353.4
3-carboxy-cis,cis-muconate cycloisomeraseSAMN04515617_111145Not AvailablePositive3014241 - 301563548926.2
3-oxoadipate enol-lactonaseSAMN04515617_111146Not AvailablePositive3015647 - 301690945499.2
acetyl-coa c-acetyltransferaseSAMN04515617_111147Not AvailableNegative3017090 - 301830142481.4
3-oxoadipate coa-transferase, beta subunitSAMN04515617_111148Not AvailableNegative3018313 - 301896022626.2
3-oxoadipate coa-transferase, alpha subunitSAMN04515617_111149Not AvailableNegative3018957 - 301962223559.6
transcriptional regulator, iclr familySAMN04515617_111150Not AvailablePositive3019812 - 302066330534.7
hypothetical proteinSAMN04515617_111151Not AvailableNegative3020836 - 302118312903.6
hypothetical proteinSAMN04515617_111152Not AvailablePositive3021644 - 302244128618.0
hypothetical proteinSAMN04515617_111153Not AvailableNegative3022405 - 30226208021.44

Displaying genes 2831 – 2840 of 4667 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites

Health Effects

No health effects information available for this bacterium.